cluster # 2398

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Anopheles gambiae
cluster # 2398 cluster # 2398 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2398#0 length = 668 sequences # 1

consensus_2398#1 length = 450 sequences # 1

consensusID : consensus_2398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [GGACTACTTTAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGCCGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCACCAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGCCGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCGCGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCAGCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTCTGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGTCGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCAGGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGAGCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC]

[+] EMBL BX604308             [GGACTACTTTAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGCCGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCACCAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGCCGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCGCGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCAGCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTCTGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGTCGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCAGGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGAGCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC]




>consensus_2398#0
GGACTACTTTAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCCGCGATCGTGCTGCT
GCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCCCTTCGCTGTGCCGTGCTGTACTG
CTTCCAGAGCTATCTCTACCGGAACGAGGCCGGGCAGACGTCGCTCGTCAAAACGCTGCT
ACAGTCCTCGGAGCAGACGCAATCCATCACCAGCGGCCAGCTGCTCTGCCGGAGCCTGTT
CAGCACCGACCCGCTGTCGAACTGGTTCGCCGCCGTCTCCATGAGCCACGCACTGTTGGA
AAATCCGGCCCAAAAGGAGCAGCTGTTGCGCGTGGTGCTGGCCACTTCGCACACCAGCAA
ACCGGTCTCGCTGCTGGAGCAGTGCAATCAGCTGCTGCAGCAGGCGAACTGCAAATTCCA
AAGCAAGGTCGGGCTGCTGATGCTGCTGTCTGTGTGGCTCAGCCACTGTCAGCTGGCGGT
GCGCACATTCCTCTCCATCCCGGGTACGGTCGCGTACCTGACCGGGCAAATCTCCGCCAA
CGAGCACGGCGACAACGAGTATCTGGTGCAGGGGCTGTGCGCCTTCCTGATGGGGATCTG
CATCCAGTTCAACGATAACAGCGTGCAGGAGCATCAGCGCGAGTTCCTCTGCCAGCTGCT
GGTGAAGC

consensusID : consensus_2398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGCCGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGCACTGCTGCTGATGATACAGCTAACGAAGGGCAACGGAAACATACAGAAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGCTGCTCGGACGGTGGCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAAGAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT]

[+] EMBL CNS08ONZ             [AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGCCGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGCACTGCTGCTGATGATACAGCTAACGAAGGGCAACGGAAACATACAGAAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGCTGCTCGGACGGTGGCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAAGAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT]




>consensus_2398#1
AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGC
CGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTG
CGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCC
GCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGC
ACTGCTGCTGATGATACAGCTAACGAAGGGCAACGGAAACATACAGAAGATTGTGGCGTT
TGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGCTGCTCGGACGGTGG
CATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAAGAACAACCCGAGCAA
TCAGCAGTTCTTCAAGGAAGGTTCGTACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2398#0      ------------------------------------------------------------
consensus_2398#1      AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGC 60
                                                                                  

consensus_2398#0      ------------------------------GGACTACTTTAACTCGTTCATGGCACCGTG 30
consensus_2398#1      CGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTG 120
                                                    ********* ********************

consensus_2398#0      CGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCC 90
consensus_2398#1      CGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCC 180
                      *************** ** *****************************************

consensus_2398#0      GCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGC 150
consensus_2398#1      GCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGC 240
                      ****** ************************************************** **

consensus_2398#0      CGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCAC 210
consensus_2398#1      ---------ACTGCTGCTGATGATACAGCTAA----CGAAGGGCA-ACGGAAACATACAG 286
                                  ***  * *  *  * ****     *   * *** *** ** *   ** 

consensus_2398#0      CAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGC 270
consensus_2398#1      AAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGC 346
                       **      **   *  *   * *   * ** **  *    **   ** *   **   **

consensus_2398#0      CGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCG 330
consensus_2398#1      TGCTCGGACGGTG-GCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAA 405
                       **     *  ** **  **   **  ***   **     *  * *  * * *** *   

consensus_2398#0      CGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCA 390
consensus_2398#1      GAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT--------------- 450
                             * *  ** *  ***   *  ***    *  ***    *               

consensus_2398#0      GCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTC 450
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      TGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGT 510
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      CGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCA 570
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      GGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGA 630
consensus_2398#1      ------------------------------------------------------------
                                                                                  

consensus_2398#0      GCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC 668
consensus_2398#1      --------------------------------------