cluster # 2406

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Anopheles gambiae
cluster # 2406 cluster # 2406 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2406#0 length = 672 sequences # 1

consensus_2406#1 length = 620 sequences # 1

consensusID : consensus_2406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCCTCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGATCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCGAAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACGAGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAAACGAAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTGGCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACAATCAAACACCCCCGTTACGAAGGCAACTGGACAGCTTGGCATCAGCAAGCCTACCAGCACAGCAGCACAGTCCCCTGTCAGCAATGGCAGCATCCCGACCGTGTTTCAGGCCACCGTTCACACCGATCCCATC]

[+] EMBL BM612957             [CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCCTCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGATCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCGAAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACGAGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAAACGAAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTGGCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACAATCAAACACCCCCGTTACGAAGGCAACTGGACAGCTTGGCATCAGCAAGCCTACCAGCACAGCAGCACAGTCCCCTGTCAGCAATGGCAGCATCCCGACCGTGTTTCAGGCCACCGTTCACACCGATCCCATC]




>consensus_2406#0
CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAG
TGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTG
CTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCC
TCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGA
TCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCG
AAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACG
AGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAA
ACGAAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTGG
CAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACAA
TCAAACACCCCCGTTACGAAGGCAACTGGACAGCTTGGCATCAGCAAGCCTACCAGCACA
GCAGCACAGTCCCCTGTCAGCAATGGCAGCATCCCGACCGTGTTTCAGGCCACCGTTCAC
ACCGATCCCATC

consensusID : consensus_2406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAATGCGGCCAAGCGCCCGAAGCTGCAGCCCTCCGAGGAGGACGAAAAGGAGCGGGCGCGGAAGGAGCACATGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGATCTGGTGGTGGCGAGGGAAAACGAACACCAGGAGGAGTACTTCAAGTCGCTCGAGCGCAAGGAAGCGATGGAGGAGAAAATGCTCAACACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCAGTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCGGGTGCACGATGCGGAGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACGGTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCAAAGCTCGCGCTGGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCGATACGC]

[+] EMBL BM592360             [CCGAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAATGCGGCCAAGCGCCCGAAGCTGCAGCCCTCCGAGGAGGACGAAAAGGAGCGGGCGCGGAAGGAGCACATGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGATCTGGTGGTGGCGAGGGAAAACGAACACCAGGAGGAGTACTTCAAGTCGCTCGAGCGCAAGGAAGCGATGGAGGAGAAAATGCTCAACACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCAGTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCGGGTGCACGATGCGGAGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACGGTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCAAAGCTCGCGCTGGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCGATACGC]




>consensus_2406#1
CCGAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAAT
GTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTA
CAAAGAAAACGAAGCGGAACATGAAAAGGAAAATGCGGCCAAGCGCCCGAAGCTGCAGCC
CTCCGAGGAGGACGAAAAGGAGCGGGCGCGGAAGGAGCACATGGCACGGATTATTGAGGC
AACCTCCTCCCACCAGGATCTGGTGGTGGCGAGGGAAAACGAACACCAGGAGGAGTACTT
CAAGTCGCTCGAGCGCAAGGAAGCGATGGAGGAGAAAATGCTCAACACGTTCAAGATGGC
GTGCAAGGCAGTCAGCTGTGCGCAGTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTG
CAAGACGGAGGGCCACCAGCTGCGGGTGCACGATGCGGAGAAGCGTTTCTTCCGCTGTGC
CGATTGTGGCAATCGGACGGTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTG
CCAAAGCTCGCGCTGGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAG
GGGATGTGCTGTCGATACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2406#0      CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAG 60
consensus_2406#1      ------------CCG--AATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAG 46
                                  ***  *******************************************

consensus_2406#0      TGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTG 120
consensus_2406#1      TGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTG 106
                      ************************************************************

consensus_2406#0      CTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCC 180
consensus_2406#1      CTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAA--TGCGGCCAAGC 164
                      **************************************** **** *  *    *    *

consensus_2406#0      TCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGA 240
consensus_2406#1      GCCCGAAGCTGCAGCC-CTCCGAGGAGGACG------AAAAGGAGCGGGCGCGGAAGGAG 217
                       **   * * * ***  *   ** *  *  *      **  * ***   * *   * *  

consensus_2406#0      TCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCG 300
consensus_2406#1      CACA----TGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGAT--CTGGTGGTGGCG 271
                        **    *  *  ** * **   * ** *  * *    ** * *   *     *   **

consensus_2406#0      AAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACG 360
consensus_2406#1      AG----GGAAAACGAACACCAGGAGGAGT--ACTTCAAGTCGCTCGAGCGCAAGGAAGCG 325
                      *     * *   *      * ** *  *   *  ** * ***  ***     * *** **

consensus_2406#0      AGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAA 420
consensus_2406#1      ATGGAGGAGAAAATGCTCAA-CACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCA 384
                      *   *         ** ***  **   **  * **    **   **   *  **     *

consensus_2406#0      ACG-AAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTG 479
consensus_2406#1      GTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCG 444
                        * *** *    *      *** *   * ** **  *    **  *  *   ***** *

consensus_2406#0      GCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACA 539
consensus_2406#1      GGTGCACGAT-GCGG----AGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACG 499
                      *     * ** ** *      *       **** ** * * *   **  ***   * ** 

consensus_2406#0      ATCAAACACCCCCG--TTACGAAGGCAA-CTGGACAGCTTGGCATCAGCAAGCCTACCAG 596
consensus_2406#1      GTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCA-----AAGCTCGCGCT 554
                       ***       ***  *  ****** **  ** *  ***** **     ****   *   

consensus_2406#0      CACAGCAGCACAGTCCCCTGTCAGCAATG-GCAGCATCCCGACCGTGTTTCAGGCCACCG 655
consensus_2406#1      GGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCG 614
                         * * *  *       **   *  * * *  **** * *     *      **   **

consensus_2406#0      TTCACACCGATCCCATC 672
consensus_2406#1      AT-ACGC---------- 620
                       * ** *