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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC]
[+] EMBL AL929986 [TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC]
consensusID : consensus_2414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT]
[+] EMBL AL935000 [CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2414#0 --------TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGA 52
consensus_2414#1 CAGCAGAATCCCCCGAGGTT-CATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGA 59
************ * *** ********** ******************
consensus_2414#0 GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 112
consensus_2414#1 GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 119
************************************************************
consensus_2414#0 CACGGCTTTCTAA-AAAGTGTGCATCATGTCAACCTG-CGCTGCATCCTTTTGCCAACAC 170
consensus_2414#1 CACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACAC 179
************* *********************** **********************
consensus_2414#0 AGCCGCTACATAGTGAAAA-AAATGGGTCTGG-ATGTAATTTTTCATAACATTTCCAACA 228
consensus_2414#1 AGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAA-ATTTCCAACA 238
******************* ************ **************** **********
consensus_2414#0 GACCCAACGCTGTTACGCAAATGGGTAG---AATTTGTCAACG-AGAGGAAGCTTGGGTG 284
consensus_2414#1 GACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTG 298
************************** * ********** ****************
consensus_2414#0 CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 344
consensus_2414#1 CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 358
************************************************************
consensus_2414#0 AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAG 404
consensus_2414#1 AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAA-ACACAAGCTTAAGCCGTCTGGTAAG 417
********************************** *************************
consensus_2414#0 TTTTCA-TGTANAT-GTCCCACACTAATCTATACTAATATAA-GCATACATTTG-ANNAA 460
consensus_2414#1 TTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAA 477
****** **** ** ************************** ******* *** * **
consensus_2414#0 CAG-TTACTAAACT--TTGACAGGG--TTCA-TAC--ATGTAGCTGCCTCGAGACTTTCG 512
consensus_2414#1 NAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCG 537
** **** ** **** **** **** *** ********* * * * * ****
consensus_2414#0 ACGTTTC---GCCCAACGTC-GCATGTCTATNCACTCCGAATCGA--GTTCATAGTNA-- 564
consensus_2414#1 ACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGC 597
*** ** *** ****** * ** * * ********** ****** ***
consensus_2414#0 -CCTCTTGGTAGACCATACGAG--TTACTCCGACTTTTAAGTATTGACACGAGTATTAGG 621
consensus_2414#1 CCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT----------------------- 634
******* **** *** * ******* **
consensus_2414#0 AACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC 665
consensus_2414#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||