These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCCCGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGAGCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCGCGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGTCGAGGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC] [+] EMBL BM592301 [CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCCCGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGAGCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCGCGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGTCGAGGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC] consensusID : consensus_2421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [GATCGCCCGAGGTTATCAGTGGCGCGCGGCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGTCGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACCGAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACCGGTGTTTAAGCTTGTTATTGTATAATTT] [+] EMBL AL930047 [GATCGCCCGAGGTTATCAGTGGCGCGCGGCATGCAGCTTCCCCTGGCAAAGGCAAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGAGCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTGCCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGTCGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCGAAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACGATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAATTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACCGAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACCGGTGTTTAAGCTTGTTATTGTATAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2421#0 CCGCGGACGCGTGGGCCGGATGTTTACCAGCAGAGCCGAGTTTCGACTAAGCTTACGCCC 60 consensus_2421#1 ------------------------------------------------------------ consensus_2421#0 CGACAATGCCGACTTGCGCCTCACGGAGAAGGGCTACGCGATGGGGCTGGTGTCCCGGGA 120 consensus_2421#1 ------------------------------------------------------------ consensus_2421#0 GCGCTTCGAGCGGACGCGTTCGATACGGCAGCGGTTGGCGAACGCGTCGGAACTGTTGCG 180 consensus_2421#1 ------------------------------------------------------------ consensus_2421#0 CGATGTGAAGAGGGGAAGCAATCAGTGGCGCGCGGCCATGCAGCTTCCCCTGGCAAAGGC 240 consensus_2421#1 ------GATCGCCCGAGGTTATCAGTGGCGCGCGGC-ATGCAGCTTCCCCTGGCAAAGGC 53 ** ** * **************** *********************** consensus_2421#0 AAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGA 300 consensus_2421#1 AAGCGTTTACAAGAGCGCTTTCGAGATGTTGGCCATCTCGAACGATGAAATTACGACCGA 113 ************************************************************ consensus_2421#0 GCGCGTGTGTGCCGTCGAGCCGGCCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTG 360 consensus_2421#1 GCGCGTGTGTGCCGTTGAGCCGACCGTTCTCGGGTGGATCAGGGATGACCGCGAGCTTTG 173 *************** ****** ************************************* consensus_2421#0 CCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGAGGATCAGTCGCGCGAGGT 420 consensus_2421#1 CCAGCGGCTCAAGATTGAAGCACTGTACAGCCTGTCGATCGCGGATCAGTCGCGCGAGGT 233 ***************************************** ****************** consensus_2421#0 CGA--GGAGGTGTTGAGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCG 478 consensus_2421#1 CGCACGGAGGTGTTGCGGAACGAAAGTTTAAGGATACCGGACGCTATCGATTACCTTTCG 293 ** ********** ******************************************** consensus_2421#0 AAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATACAACCTCAGACG 538 consensus_2421#1 AAATCCCTCAATCTATCGTTCGAAGAGCAAGAAAAGTTAGTCAAAATTCAACCTCAGACG 353 *********************************************** ************ consensus_2421#0 ATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCCTCCATCGTACGGTTGGTGAAA 598 consensus_2421#1 ATCGCTGCTGCCAGCCGAATTCAAGGCATTACACCGTCATCCATCGTCCGGTTGGTGAAA 413 ************************************** ******** ************ consensus_2421#0 TTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAAC-------------------- 638 consensus_2421#1 TTCGTGAAGCAACATGAAGCACTCAGTGCCGCCGCCTAACTGCCGACCTTGCTGCCTACC 473 **************************************** consensus_2421#0 ------------------------------------------------------------ consensus_2421#1 GAACCTTGCTGTACCATAATCACACACACACAAACATCGTTATAAACGAAAGACGCAACC 533 consensus_2421#0 ---------------------------- consensus_2421#1 GGTGTTTAAGCTTGTTATTGTATAATTT 561 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||