These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCCCACGCGTCCGCTCTTTCGCAGCTCGACCTGTCGCAGTCGAAGCTGAAGCATCTGCACCCACCGACCGGCAGTGTGGCCCTGGCGCCCGCCGCCTACCTGAACGTGCTCGAGATACTGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCAGAAGGTGCTCCGCTACATCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCCACGGGCTGGCCGCGATGCACCTGGTCGAGCTGTACTACATCGACGTGTGCGACCAGCCGGAGGAGGGCCCGGCTGGACCGACGTACGAAAAGCCGGCCTTCCTGCGCCCGGGCGCCATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGGCATCATCATCGGGCTGGTGATCGTGTGTCTCAAGCGCCGGCTGGCGGCCCAGGGGCTCGGCTTTACCTCCGCGCCGGTCCGCTACACCTCGGTGCGCGAAAGCACCACGTCCACCGTTTTTCAGCCGTAGAGCGTGGTGGCTTGTGGACTGTGAGTCGGCGGGAAAAAGGGAGAGACTGCAAAACGTTCCTTACACTAGGGCTGGTAGAGTAAACCGCGGTTGAACATCAAAATTCCACATTTAAGC] [+] EMBL BM634733 [CCGCCCACGCGTCCGCTCTTTCGCAGCTCGACCTGTCGCAGTCGAAGCTGAAGCATCTGCACCCACCGACCGGCAGTGTGGCCCTGGCGCCCGCCGCCTACCTGAACGTGCTCGAGATACTGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCAGAAGGTGCTCCGCTACATCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCCACGGGCTGGCCGCGATGCACCTGGTCGAGCTGTACTACATCGACGTGTGCGACCAGCCGGAGGAGGGCCCGGCTGGACCGACGTACGAAAAGCCGGCCTTCCTGCGCCCGGGCGCCATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGGCATCATCATCGGGCTGGTGATCGTGTGTCTCAAGCGCCGGCTGGCGGCCCAGGGGCTCGGCTTTACCTCCGCGCCGGTCCGCTACACCTCGGTGCGCGAAAGCACCACGTCCACCGTTTTTCAGCCGTAGAGCGTGGTGGCTTGTGGACTGTGAGTCGGCGGGAAAAAGGGAGAGACTGCAAAACGTTCCTTACACTAGGGCTGGTAGAGTAAACCGCGGTTGAACATCAAAATTCCACATTTAAGC] consensusID : consensus_2422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [TCGCCCGAGGTNTATCTGTGTNAGCTCGACTGTCGCAGTCGAAGCTGAAGCATCTGACCCACCGACCGGCAGTGTGGGCCTGCGCCCGCCGCCTACCTGAACGTGCTCGAGATACTGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCAAAGGTGCTCCGCTACATCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCCACGGGCTGGCCTGCGATGCACCTGGTCGAGCTGTACTACATCTGACGTGTGCGACCAGCCGGAGTGAGTGGCCCGGCTGGACCGACGTACGAAAAGCCGGCTTCCTGCGCCCGGGCGCCATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGGATCATCATCGGGCTGGGTGATCGTGTGTCTCAAGCGCCGGCTGGGGGCCAGGGGCTCGGCTTTACCTCCGCGCCGGTCCGTACACCTCG] [+] EMBL AL930049 [TCGCCCGAGGTNTATCTGTGTNAGCTCGACTGTCGCAGTCGAAGCTGAAGCATCTGACCCACCGACCGGCAGTGTGGGCCTGCGCCCGCCGCCTACCTGAACGTGCTCGAGATACTGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCAAAGGTGCTCCGCTACATCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCCACGGGCTGGCCTGCGATGCACCTGGTCGAGCTGTACTACATCTGACGTGTGCGACCAGCCGGAGTGAGTGGCCCGGCTGGACCGACGTACGAAAAGCCGGCTTCCTGCGCCCGGGCGCCATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGGATCATCATCGGGCTGGGTGATCGTGTGTCTCAAGCGCCGGCTGGGGGCCAGGGGCTCGGCTTTACCTCCGCGCCGGTCCGTACACCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2422#0 CCGCCCACGCGTCCGCTCTTTCGCAGCTCGACCTGTCGCAGTCGAAGCTGAAGCATCTGC 60 consensus_2422#1 TCGCCCGAG-GTNTA-TCTGTGTNAGCTCGAC-TGTCGCAGTCGAAGCTGAAGCATCTG- 56 ***** * ** *** * ******** ************************** consensus_2422#0 ACCCACCGACCGGCAGTGTGGCCCTGGCGCCCGCCGCCTACCTGAACGTGCTCGAGATAC 120 consensus_2422#1 ACCCACCGACCGGCAGTGTGGGCCTG-CGCCCGCCGCCTACCTGAACGTGCTCGAGATAC 115 ********************* **** ********************************* consensus_2422#0 TGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCAGAAGGTGCTCCGCTACA 180 consensus_2422#1 TGCTGCTGCACGAGAACCCGTGGCACTGCGACTGTGCGCTGCA-AAGGTGCTCCGCTACA 174 ******************************************* **************** consensus_2422#0 TCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCC 240 consensus_2422#1 TCCACTTCTTCTCCCACTCGGACTACGAGGAGGAGGACGATACGCGCTGCGAAACGCCCC 234 ************************************************************ consensus_2422#0 ACGGGCTGGCC-GCGATGCACCTGGTCGAGCTGTACTACATC-GACGTGTGCGACCAGCC 298 consensus_2422#1 ACGGGCTGGCCTGCGATGCACCTGGTCGAGCTGTACTACATCTGACGTGTGCGACCAGCC 294 *********** ****************************** ***************** consensus_2422#0 GGAG-GAG-GGCCCGGCTGGACCGACGTACGAAAAGCCGGCCTTCCTGCGCCCGGGCGCC 356 consensus_2422#1 GGAGTGAGTGGCCCGGCTGGACCGACGTACGAAAAGCCGGC-TTCCTGCGCCCGGGCGCC 353 **** *** ******************************** ****************** consensus_2422#0 ATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGGCATCATCATCGGGCTG 416 consensus_2422#1 ATCTTTCTCTCCCTGCTGTCGGTCGGCATCGTCGTCGGGCTCGG-ATCATCATCGGGCTG 412 ******************************************** *************** consensus_2422#0 G-TGATCGTGTGTCTCAAGCGCCGGCTGGCGGCCCAGGGGCTCGGCTTTACCTCCGCGCC 475 consensus_2422#1 GGTGATCGTGTGTCTCAAGCGCCGGCTGGGGGCC-AGGGGCTCGGCTTTACCTCCGCGCC 471 * *************************** **** ************************* consensus_2422#0 GGTCCGCTACACCTCGGTGCGCGAAAGCACCACGTCCACCGTTTTTCAGCCGTAGAGCGT 535 consensus_2422#1 GGTCCG-TACACCTCG-------------------------------------------- 486 ****** ********* consensus_2422#0 GGTGGCTTGTGGACTGTGAGTCGGCGGGAAAAAGGGAGAGACTGCAAAACGTTCCTTACA 595 consensus_2422#1 ------------------------------------------------------------ consensus_2422#0 CTAGGGCTGGTAGAGTAAACCGCGGTTGAACATCAAAATTCCACATTTAAGC 647 consensus_2422#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||