These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAAGTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAACCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGATCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTGAACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCACGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNCACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACTGCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATATATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTATATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANAACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAGTAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANCCACAAAATCCGGACACAACTCNGTCAG] [+] EMBL AL930068 [CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAAGTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAACCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGATCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTGAACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCACGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNCACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACTGCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATATATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTATATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANAACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAGTAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANCCACAAAATCCGGACACAACTCNGTCAG] consensusID : consensus_2425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [GAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGGCAGGTGAAAGAGAAAAATATTTATATCAATGTTGAACATAAAGAAAACCAACAAACTTAAAACAAATGTTTGCGAAACTTATAGCCAAATGGATCATTTAAACAATGGTGTAAAGAAAGAAGTTACAGATTATTTATCGAACAGAAACAAAAAACAAAAAGCAACAGATACAACATTGAAAGAGCACGAGTATAGAGATAATGCAACTAAAGACAAATTGTAGAGAAGTAAAGAGATCGAAACGATCGCATGAAACTTAGTGCGAATACCAGCCAACAACAAACGCACACACACGCGGCAAAGAAGGAAAAGATAAAACCTATTTAATATTATATATATACACTGAAAAAAAAACACACATATATATACACACACACATACTTATATAAAAATGTCACCCAGGGTGGTATTGAAACGAGCGAGCAAAATAAAACAGAACAGAACAGAAACAAAAAACAAAACACGACGCAGAGTGTGAGGAGTTATGAGAATGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCACATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGGAAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG] [+] EMBL BX611815 [GAGCGAAATGAATAGAAAGAATGAAATTAAACCAATAGAAAGGCAGGTGAAAGAGAAAAATATTTATATCAATGTTGAACATAAAGAAAACCAACAAACTTAAAACAAATGTTTGCGAAACTTATAGCCAAATGGATCATTTAAACAATGGTGTAAAGAAAGAAGTTACAGATTATTTATCGAACAGAAACAAAAAACAAAAAGCAACAGATACAACATTGAAAGAGCACGAGTATAGAGATAATGCAACTAAAGACAAATTGTAGAGAAGTAAAGAGATCGAAACGATCGCATGAAACTTAGTGCGAATACCAGCCAACAACAAACGCACACACACGCGGCAAAGAAGGAAAAGATAAAACCTATTTAATATTATATATATACACTGAAAAAAAAACACACATATATATACACACACACATACTTATATAAAAATGTCACCCAGGGTGGTATTGAAACGAGCGAGCAAAATAAAACAGAACAGAACAGAAACAAAAAACAAAACACGACGCAGAGTGTGAGGAGTTATGAGAATGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCACATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGGAAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2425#0 CAAGAATCGCCTGAGGTTAAAACCCCAAAAACGATACAATGCGATGTGTATACGGTAAAA 60 consensus_2425#1 ------------------------------------------------------------ consensus_2425#0 GTGGTGNTGTANTGTACGTGTCGGGCGAGCGAAATGAATAGAAAGAATGAAATTAAACCA 120 consensus_2425#1 --------------------------GAGCGAAATGAATAGAAAGAATGAAATTAAACCA 34 ********************************** consensus_2425#0 ATAGAAAGTGCAGTGTGAANGAGAACAATATTTATATCAATTGTTTGAACATAAAGAAAA 180 consensus_2425#1 ATAGAAAG-GCAG-GTGAAAGAGAAAAATATTTATATCAATG--TTGAACATAAAGAAAA 90 ******** **** ***** ***** *************** **************** consensus_2425#0 CCNACAAACTTAAACACCAANATTGTTTTGCTGCACACACTTCATAGCCCAAATTGTGGA 240 consensus_2425#1 CCAACAAACTTAAA-ACAAATGTT---------TGCGAAACTTATAGCCAAA----TGGA 136 ** *********** ** ** ** * * * ****** ** **** consensus_2425#0 TCCATTTAACACATGTGTTGTACACAGCANCATGCAAGTTACCATGCATTCATTTATCTG 300 consensus_2425#1 TCATTTAAACA---ATGGTGTA------AAGAAAGAAGTTACA----GATTATTTATC-G 182 ** ** **** ** **** * * ******* * ******* * consensus_2425#0 AACCATGAAACCAACAAAACAAAAAATGCCAACCAGATTACAACATTTGCAACAGCAGCA 360 consensus_2425#1 AAC---AGAAACAA-AAAACAAAAAGC----AACAGAT-ACAACATTGA----AAGAGCA 229 *** ** *** ********** * ***** ******** * **** consensus_2425#0 CGGAGTATTAGCAGCATTAATTGCAACTTAAAAGACCACACATTTGTACCAGNCAGTCNC 420 consensus_2425#1 CG-AGTAT----AGAGATAAT-GCAACTAAAGACA------AATTGTA--GAGAAGTAAA 275 ** ***** ** **** ****** ** * * * ***** *** consensus_2425#0 ACGCGATCGAAACGATCGCACTNAAACTCTACTTGCGAATACCATGACCAACAACAAACT 480 consensus_2425#1 --GAGATCGAAACGATCGCA-TGAAACTTAG--TGCGAATACCA--GCCAACAACAAACG 328 * **************** * ***** *********** ************ consensus_2425#0 GCACCACACACGCGTGCCAACCACTNTGAAACTGATAACAACCTATTTCACATATTCATA 540 consensus_2425#1 ----CACACACACGCGGCAAAGA---AGGAAAAGATAA-AACCTATTTAATAT---TATA 377 ******* ** * *** * * ** ***** ********* * ** *** consensus_2425#0 TATATACACTTGAANNAAACAAACANACACATATATCATANCACCACAGACANATACTTA 600 consensus_2425#1 TATATACACTGAAAAAAA---AACACACATATATATA-------CACACACACATACTTA 427 ********** ** ** **** *** ****** **** *** ******* consensus_2425#0 TATAAANAATTGNCACCNCCAGGGTGTGTNATCTGNACACNAGGCGAGGCCAAATAAANA 660 consensus_2425#1 TATAAAAA--TGTCACCC--AGGGTG----GTATTGAAACGAG-CGAG-CAAAATAAAA- 476 ****** * ** **** ****** * * * ** ** **** * ******* consensus_2425#0 ACCAGAACAGACAAAGNAAACAACACAACAANAAAAACACGACGGCAGAGTGTGCAGGAG 720 consensus_2425#1 --CAGAACAGA-ACAGAAA------CAAAAAACAAAACACGACG-CAGAGTGTG-AGGAG 525 ********* * ** ** *** ** *********** ********* ***** consensus_2425#0 TAACNAGAGAACTGGGCGAAACTCAATNAAATTCANAANC-------CACAAAATCCGGA 773 consensus_2425#1 TTATGAGAA---TGGGCGATTTTCTTTTACTTCTTCCATTAGTCCGACACATCGTCGCCA 582 * * *** ******* ** * * * * **** ** * consensus_2425#0 CACAACTCNGTCAG---------------------------------------------- 787 consensus_2425#1 CATTATATCATCATCATGATTCTAGTTGTTTATTGTTTAAGAACCGTTGTTGTTTATGGG 642 ** * *** consensus_2425#0 --------------------------------------- consensus_2425#1 AAATATCGAAAAACCAAGGATGAAATTAATAAATAAAAG 681 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||