These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCGAGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAACCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACTTCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCAATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACACCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTGGCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGCACCGGAAGAAGGCACACC] [+] EMBL BX608877 [ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCGAGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAACCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACTTCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCAATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACACCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTGGCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGCACCGGAAGAAGGCACACC] consensusID : consensus_2426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGCCCACGCGTCCGGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCGGCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGCACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACATTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATTC] [+] EMBL BM596316 [CCGCCCACGCGTCCGGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCGAAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCGGTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGGACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCCATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCGGCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCAATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGCACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACATTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2426#0 ACCGGCAACAGGTCATCACGCACATCGACATGCACAACCATCCGGAAAAGTATTGATGCG 60 consensus_2426#1 ------------------------------------------------------------ consensus_2426#0 AGGTCTGCAAGGAGGTGCACCAGAATCTGCATCAACACATGATGAAGGCCCATGCGCCAA 120 consensus_2426#1 ------------------------------------------------------------ consensus_2426#0 CCACGGCGGACGAGGCGGACAAAAAGTACAAGTGCGATCAGTGTGGAAGGTCGTTCAACT 180 consensus_2426#1 ------------------------------------------------------------ consensus_2426#0 TCCTGGCGAACTTAAAGATGCACGTGGATTGCGTCCACGGCGTGAAGGACGTGAAGTGCA 240 consensus_2426#1 ------------------------------------------------------------ consensus_2426#0 ATGTGTGCAACAAATTCTTCAACTACAGAGCCTATCGGACGCACAAGCGTACCGCGCACA 300 consensus_2426#1 ------------------------------------------------------------ consensus_2426#0 CCGACCTGATGCTGATGTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCG 360 consensus_2426#1 CCGCCCACGCGTCCG-GTGCGAGCTCTGTCCAAAGATGTTCAAAAATCGAAAGTCGTTCG 59 *** ** * ******************************************** consensus_2426#0 AAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCG 420 consensus_2426#1 AAGTGCACAAAGCTTCGCACGAGGGCCTGATGCTGCGGATGACGAACTGTGTGCTGTGCG 119 ************************************************************ consensus_2426#0 GTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGG 480 consensus_2426#1 GTAAGCTCATACGCACCTGCAGCATGTCGAAGCACATGAAAACGATCCACTCGGAGGAGG 179 ************************************************************ consensus_2426#0 ACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCC 540 consensus_2426#1 ACCCGGTCAATTGCGATCTGTGCGGCAAAATGTTCCGCACCACGTTCCACATGAAGCGCC 239 ************************************************************ consensus_2426#0 ATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGATCCTTCAAGTGCGAGGTGTGTG 600 consensus_2426#1 ATCAGAAGAACACGTGCGAGGTGACGATGGATTCGCGCTCCTTCAAGTGCGAGGTGTGCG 299 ************************************* ******************** * consensus_2426#0 GCAAGGGTTTCTCCACCAAGCTGACGATGATGGAACATATGACGACGCACACGCGCACCA 660 consensus_2426#1 GCAAGGGTTTCTCCACCAAGCTGACTATGATGGAACATATGACGACGCACACGCGCACCA 359 ************************* ********************************** consensus_2426#0 ATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTATAAGC 720 consensus_2426#1 ATCAGTATCAGTGCGCGTTCTGCTTCAAATCGTTCGGCTACATCTCGAACCTGTACAAGC 419 ******************************************************* **** consensus_2426#0 ACCGGAAGAAGGCACACC------------------------------------------ 738 consensus_2426#1 ACCGGAAGAAGGCACACCCGCTCGAGTGGCAGGAGGTGCAGGCGCACCCGGAAGAAAACA 479 ****************** consensus_2426#0 ------------------------------------------------------------ consensus_2426#1 TTGCATCGGTAATCGTCGTTCGAAACTGAAGTGCTGTGGTTTTCTGTTTTCTTTACCATT 539 consensus_2426#0 - consensus_2426#1 C 540 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||