cluster # 2435

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Anopheles gambiae
cluster # 2435 cluster # 2435 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2435#0 length = 613 sequences # 1

consensus_2435#1 length = 562 sequences # 1

consensusID : consensus_2435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [GGCAGAATCGGCACGATGGCGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCCGATCAGGGAAGTAGGGAGACCTCAAAAAAGGGAAAGTAGGTGGTCGTCCCTCGGGAGTGTTCTTCATGCAGCGTTCCACCCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACGCACGACGACCGACGCCCGGGTTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTGGGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCCTGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTTCGGTGTGTTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAGGGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCATGAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGGCAATTCTTAGTGAGTTATTGGTACTGTTC]

[+] EMBL BX468278             [GGCAGAATCGGCACGATGGCGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCCGATCAGGGAAGTAGGGAGACCTCAAAAAAGGGAAAGTAGGTGGTCGTCCCTCGGGAGTGTTCTTCATGCAGCGTTCCACCCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACGCACGACGACCGACGCCCGGGTTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTGGGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCCTGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTTCGGTGTGTTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAGGGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCATGAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGGCAATTCTTAGTGAGTTATTGGTACTGTTC]




>consensus_2435#0
GGCAGAATCGGCACGATGGCGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGG
TGCCGAGTAGAGCCCGAGTTGCCGATCAGGGAAGTAGGGAGACCTCAAAAAAGGGAAAGT
AGGTGGTCGTCCCTCGGGAGTGTTCTTCATGCAGCGTTCCACCCGGATTCGGTAACACTT
GATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACGCACGACGACCGA
CGCCCGGGTTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTGGGGGGAAAGTGGTA
CTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCCTGGCGGGAGTTTGA
GAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTTCGGTGTGTTTGATGGCAAAAGTT
AGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAGGGAAAGGGACCCGATG
CANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCATGAGCAAGTGTGTGGAA
CAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGGCAATTCTTAGTGAGTT
ATTGGTACTGTTC

consensusID : consensus_2435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTTGTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAATACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGGGACGACGTGCTGATCCCGGTAGTGTTCCTCTTCACCAAGGAAGCGGAACAGCTCATCAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACGGCGCTGAAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAACGATATTGCCGCCGATCAGGGAAGTAGGGAGACGTAAAAAAAAAGGGAAAGTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTTCGATGTG]

[+] EMBL AL930152             [AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTTGTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAATACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGGGACGACGTGCTGATCCCGGTAGTGTTCCTCTTCACCAAGGAAGCGGAACAGCTCATCAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACGGCGCTGAAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAACGATATTGCCGCCGATCAGGGAAGTAGGGAGACGTAAAAAAAAAGGGAAAGTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTTCGATGTG]




>consensus_2435#1
AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTTGTC
GATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAATACG
CCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGGGACGAC
GTGCTGATCCCGGTAGTGTTCCTCTTCACCAAGGAAGCGGAACAGCTCATCAAGGCGATC
AAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACGGCGCTGAAGGAAAAGCTG
GCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAAGTGACGCCATAG
TAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAACGATATTGCCGC
CGATCAGGGAAGTAGGGAGACGTAAAAAAAAAGGGAAAGTANGTGGTCGTCCCTCGGGAG
GTGTTCTTCATGCAGCGTTCCAACCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCT
CTCACATCTGTATTTCGATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2435#0      GGCAGAATCGGC-ACGATGGCGAAAAGTAGTGACT-CAAAAGTGACGCCATAGTAGTAGC 58
consensus_2435#1      ---AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTT 57
                         *  **** *   *  *  ****  * ** * *     ** ** ** *  * *     

consensus_2435#0      GGTGCCGAGTAGAGCC-CGAGTTGCCGATCAGGGAAGTAGG-------GAGACCTCAAAA 110
consensus_2435#1      GTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAAT 117
                      *  *   *   *** * ** *  * **    * *  ****        * **     ** 

consensus_2435#0      AAGGGAAAGTAGGTGGTCGTCCCTCGG-GAGTGTTCTTCATGCAGCGTTCCACCCGGATT 169
consensus_2435#1      ACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGG--- 174
                      * *  ***   *  * **  *  ** *  * ****   ****  * *   *   ***   

consensus_2435#0      CGGTAACAC-TTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACG 228
consensus_2435#1      -GACGACGTGCTGATCC-CGGTAGTGTTCCTCTT-CACCAAGGAAGCGGAACAGCTCAT- 230
                       *   **    ****** **  * *  ******  ** *       **      *  *  

consensus_2435#0      CACGACGACCGACGCCCGGG--TTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTG 286
consensus_2435#1      CAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACG--GCGCTG 288
                      ** * *** * * *  * *   *    *          *  *   *   * *  ** ***

consensus_2435#0      GGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCC 346
consensus_2435#1      AAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAA 348
                        ** ****  *  * *     *  *           * *     * *   * **     

consensus_2435#0      -TGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTT-CGGTGTG 404
consensus_2435#1      GTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAA 408
                       ** **  *   *   ** **  ****     ** * *     * ***  *  * ***  

consensus_2435#0      TTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAG 464
consensus_2435#1      CGATATTGCCGCCGATCAGGGAAGTA-GGGAGACGTAAAAAAAAAGGG---------AAA 458
                          ** **    * *    *** **  * * ****   ***** * *         ** 

consensus_2435#0      GGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCAT 524
consensus_2435#1      GTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGT---- 514
                      * *   ** *      *   *   ***  **      *    *** * **   **     

consensus_2435#0      GAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGG 584
consensus_2435#1      -AACACTTGATCCGCGCAAATCCTCCTCTCACAT-CTGTATTTCGATGTG---------- 562
                       * **  **    *  ***         *** *  * *** * *****            

consensus_2435#0      CAATTCTTAGTGAGTTATTGGTACTGTTC 613
consensus_2435#1      -----------------------------