cluster # 2448

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Anopheles gambiae
cluster # 2448 cluster # 2448 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2448#0 length = 486 sequences # 1

consensus_2448#1 length = 463 sequences # 1

consensusID : consensus_2448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [GAATCGCCCGAGGTTGCACGAGGGCAGCACGATCTTTTGGATGGTGGGAGTTGAACGCTGGGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGTGGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGGTCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTCTGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGAAGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCGGCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTGTTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGCCCCGGCTCCAG]

[+] EMBL AL930243             [GAATCGCCCGAGGTTGCACGAGGGCAGCACGATCTTTTGGATGGTGGGAGTTGAACGCTGGGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGTGGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGGTCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTCTGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGAAGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCGGCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTGTTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGCCCCGGCTCCAG]




>consensus_2448#0
GAATCGCCCGAGGTTGCACGAGGGCAGCACGATCTTTTGGATGGTGGGAGTTGAACGCTG
GGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGT
GGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGG
TCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTC
TGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGA
AGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCG
GCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTG
TTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGCCCCGG
CTCCAG

consensusID : consensus_2448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [AAGAATCCCCCCGAGGTTATGGTGGGAGTTGAACGCTGGGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGTGGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGGTCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTCTGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGAAGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCGGCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTGTTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGGCCCGGTCCAG]

[+] EMBL AL930716             [AAGAATCCCCCCGAGGTTATGGTGGGAGTTGAACGCTGGGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGTGGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGGTCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTCTGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGAAGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCGGCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTGTTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGGCCCGGTCCAG]




>consensus_2448#1
AAGAATCCCCCCGAGGTTATGGTGGGAGTTGAACGCTGGGCGGTGGACAGGCTTTGCCCA
CCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGTGGCTGTCAGTTTCGGTACGGTC
GCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGGTCTGATAAGTGTGCAAGCAGAT
TTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTCTGGTGGTTGTCGCTGCCTCGCT
GAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGAAGGCGCTCCTCAGCAAGCTGCT
GCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCGGCTACGGAGGCCATTCCAGCTA
CGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTGTTGCCGTCGCTCCAGTCCACTA
CGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGGCCCGGTCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2448#0      GAATCGCCCGAGGTTGCACGAGGGCAGCACGATCTTTTGGATGGTGGGAGTTGAACGCTG 60
consensus_2448#1      ------------------AAGAATCCCCCCGAGGTT----ATGGTGGGAGTTGAACGCTG 38
                                              *  * ***  **    ********************

consensus_2448#0      GGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGT 120
consensus_2448#1      GGCGGTGGACAGGCTTTGCCCACCCGGGTTGGCAACAAAAGGACCAACATCCGGCAGAGT 98
                      ************************************************************

consensus_2448#0      GGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGG 180
consensus_2448#1      GGCTGTCAGTTTCGGTACGGTCGCGGAGCACGTCTAACACGCGCGTTTTTTTATCGTCGG 158
                      ************************************************************

consensus_2448#0      TCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTC 240
consensus_2448#1      TCTGATAAGTGTGCAAGCAGATTTTTGCAAAGATGAACCGTGCCATCGCTGTGCTGTGTC 218
                      ************************************************************

consensus_2448#0      TGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGA 300
consensus_2448#1      TGGTGGTTGTCGCTGCCTCGCTGAGCGAGGGAACGTTCGATGTGCTGCTGCAGAAGAAGA 278
                      ************************************************************

consensus_2448#0      AGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCG 360
consensus_2448#1      AGGCGCTCCTCAGCAAGCTGCTGCACAAGGACGAAGGAGCGGGCTACGGAGGCCATTCCG 338
                      ************************************************************

consensus_2448#0      GCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTG 420
consensus_2448#1      GCTACGGAGGCCATTCCAGCTACGGAGGCCATTCGGGAGCAGTAGGATACCAAGCCACTG 398
                      ************************************************************

consensus_2448#0      TTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGCCCCGG 480
consensus_2448#1      TTGCCGTCGCTCCAGTCCACTACGCTCCTGCTCCAGTAGCGTACGCCGCTCCTGGCCCGG 458
                      ****************************************************** *****

consensus_2448#0      CTCCAG 486
consensus_2448#1      -TCCAG 463
                       *****