These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTATCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCACGCCGACTAACCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTAGCTCTGTTCTCTGTGTCAGCCTTTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGGCAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGGTAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTTTCTAGCATCGTTCTACCAGC] [+] EMBL BM643037 [ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTATCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCACGCCGACTAACCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTAGCTCTGTTCTCTGTGTCAGCCTTTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGGCAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGGTAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTTTCTAGCATCGTTCTACCAGC] consensusID : consensus_2449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [CCGGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTGCCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCTT] [+] EMBL BM596095 [CCGGCGAAAGTGTTTGTGTCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTGCCCCCCTCATCAGCATCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2449#0 ACCCACGCGTCCGCGGACGCGTGGGCAGCGCTCGTGCTCGTCGTGCTAGATTTGGTGGTA 60 consensus_2449#1 ------------------------------------------------------------ consensus_2449#0 TCCGTTTTCCAGCGTTCATTTCTTCAAAAAGTTTTTAAAGTGCCAGCGAAAGTGTTTGTG 120 consensus_2449#1 ------------------------------------------CCGGCGAAAGTGTTTGTG 18 ** *************** consensus_2449#0 TCCGTGGTCAAAAGTGAGTGAGTGATTCTTGGCA-CGCCGACTAACCCCCCTCATCAGCA 179 consensus_2449#1 TCCGTGGTCAAAAGTGAGTGAGTGATTGTTGGCAACGCCAACTG-CCCCCCTCATCAGCA 77 *************************** ****** **** *** *************** consensus_2449#0 TCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTA---GCTCTGTTCTCTGTGTCAGCCT 236 consensus_2449#1 TCCATCGTGAAGCAGGAAGCAGTCAGTCAGCTCTACTAGCTCTGTGCTCTGTGTTAGCCT 137 *********************************** ******* ******** ***** consensus_2449#0 TTTCCTTTTCCCGGTGGCCAGTTCCGTCGGAGGCATCACAACAAAAAAGCCTGCAATTGG 296 consensus_2449#1 T----------------------------------------------------------- 138 * consensus_2449#0 CAAGGCGGCATCTTTTGTCGCGGTTAACTCAACCCCCCTCAACTTACCCACGGATTTCGG 356 consensus_2449#1 ------------------------------------------------------------ consensus_2449#0 TAGGTTCTTCAGGCGTCGCCAACTTCCAACACCAGTCAAGGATGTGCCAGTTCAAAGTTT 416 consensus_2449#1 ------------------------------------------------------------ consensus_2449#0 TCTAGCATCGTTCTACCAGC 436 consensus_2449#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||