These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2451#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAGTGCGTGAGGAGTGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAACGTTCATCGTGAACATAACCGGTGCTGGTGGTGGCGGTGGTGGTGGTCGCGGGGTGGATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTAGGTAGCAAACCTCACACTACAACGGTGGTTGAGATAACGACGGAAGAAATCGGCCCACACCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCGATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAGGGAGAAACTGTAACGATACCTGCTTC] [+] EMBL BM596040 [CCGCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAGTGCGTGAGGAGTGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAACGTTCATCGTGAACATAACCGGTGCTGGTGGTGGCGGTGGTGGTGGTCGCGGGGTGGATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTAGGTAGCAAACCTCACACTACAACGGTGGTTGAGATAACGACGGAAGAAATCGGCCCACACCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCGATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAGGGAGAAACTGTAACGATACCTGCTTC] consensusID : consensus_2451#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCACAATCAAACGATGTAGAGAGGTTTTGGCGAGAAGATCGGTAGCATTAGGAGGCATTATGATATATGGTACCCAGGGAAACGGTGAATTATAAAGTGAAGATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTAGAGAAGCTTCAAAGGAAAGGAAATGTGCAAGTAAATTACTTTTACGTATGAGAGTTGATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTATTAAAAGACGAGACATAAGAGTAAAGAAATAATTTCTATTTTTTCC] [+] EMBL BM644172 [CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCACAATCAAACGATGTAGAGAGGTTTTGGCGAGAAGATCGGTAGCATTAGGAGGCATTATGATATATGGTACCCAGGGAAACGGTGAATTATAAAGTGAAGATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTAGAGAAGCTTCAAAGGAAAGGAAATGTGCAAGTAAATTACTTTTACGTATGAGAGTTGATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTATTAAAAGACGAGACATAAGAGTAAAGAAATAATTTCTATTTTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2451#0 ---------------CCGC-GCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAA 44 consensus_2451#1 CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAA 60 **** **************************************** consensus_2451#0 ACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCAT 104 consensus_2451#1 ACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCAT 120 ************************************************************ consensus_2451#0 TGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAG 164 consensus_2451#1 TGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAG 180 ************************ *********************************** consensus_2451#0 CTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCC 224 consensus_2451#1 CTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCC 240 ** *********** ********************************************* consensus_2451#0 ACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAG 284 consensus_2451#1 ACGAAAGTGTGCGGCACAATCAAA--CGATGTA---GAGAGGTTTTGGCGAGAAGATCGG 295 **************** **** * * ** *** ** *** * ** * * consensus_2451#0 T-GCGTGAGGAG---TGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAAC 340 consensus_2451#1 TAGCATTAGGAGGCATTATGATATATGGTACC-CAGGGAAACGGTGAATTATAAAGTGAA 354 * ** * ***** * *** * * * * * * ** ** * ** * * consensus_2451#0 GTTCATCGTGAACATAAC--CGGTGCTGGTGGTGGCGGTGGTGGTG-GTCGCG--GGGTG 395 consensus_2451#1 GATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTA 414 * ** * ** * * * * * * * * * ** * * * * * ** consensus_2451#0 GATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTA 455 consensus_2451#1 GAGAAGCTTCAAAGGAAAGGAAATGT---GCAAGTAAATTACTTTTACGTA-TGAGAGTT 470 ** * * * *** * *** ** * ** * * * * * ** ** consensus_2451#0 GGTAGCAAACCTCACACTACAACG-GTGGTTGAGATAACGACGGAAGAAATCGGCCCACA 514 consensus_2451#1 GATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTA 530 * * * * * * ***** * ** **** ** * * * * consensus_2451#0 CCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCG 574 consensus_2451#1 TTAAAAGACGAGACATAAGAGTAAA---GAAATAATTTCTATTTTTTCC----------- 576 *** * * * * * ** ** ** * ** **** consensus_2451#0 ATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAG 634 consensus_2451#1 ------------------------------------------------------------ consensus_2451#0 GGAGAAACTGTAACGATACCTGCTTC 660 consensus_2451#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||