cluster # 2452

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Anopheles gambiae
cluster # 2452 cluster # 2452 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2452#0 length = 771 sequences # 1

consensus_2452#1 length = 644 sequences # 1

consensusID : consensus_2452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence

                              [CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGTTTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCTCTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACTCATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAGTTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAAACAAAACAAAAAAGTANCAACGAAACACCTANGCTTNCAGTGCTCAACTGACACCCTGTACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCCTGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAACGGACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGACACCACAGGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCAAACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG]

[+] EMBL AL930295             [CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGTTTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCTCTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACTCATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAGTTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAAACAAAACAAAAAAGTANCAACGAAACACCTANGCTTNCAGTGCTCAACTGACACCCTGTACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCCTGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAACGGACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGACACCACAGGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCAAACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG]




>consensus_2452#0
CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACAT
TCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTT
TACCATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGTT
TTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCTC
TGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACTC
ATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAGT
TGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAAA
CAAAACAAAAAAGTANCAACGAAACACCTANGCTTNCAGTGCTCAACTGACACCCTGTAC
AGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCCTGC
ACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAACGG
ACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGACACC
ACAGGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCAAACAG
GTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG

consensusID : consensus_2452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGTTTTATTTCTCACTGTTCTTTTCCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTGTGTACATTTGACATACGATTCTAAAGTATAAATAATCCCAAGCTCTATCTATATAACTCTGTTTGTTTTGCGGTGGGCAAACCATTGCTTGAGCTTGTACGTTTCTCTGTTATTCGATTATCTGAGCTATTTGTCTTAATTTGCCTCTAAAGTACATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAAGAGTAAGAAGCTGAAAGAGAGATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATATTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAGTATAAGAACAGCACAAGAAAAGTTCACCGTTATATATTTCGCATCACCTAAACTGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGGAGTGAGACAGGCGATGGCTTTTTTTTTTCTTCG]

[+] EMBL BM589055             [CCGTTTTATTTCTCACTGTTCTTTTCCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTGTGTACATTTGACATACGATTCTAAAGTATAAATAATCCCAAGCTCTATCTATATAACTCTGTTTGTTTTGCGGTGGGCAAACCATTGCTTGAGCTTGTACGTTTCTCTGTTATTCGATTATCTGAGCTATTTGTCTTAATTTGCCTCTAAAGTACATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAAGAGTAAGAAGCTGAAAGAGAGATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATATTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAGTATAAGAACAGCACAAGAAAAGTTCACCGTTATATATTTCGCATCACCTAAACTGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAACTGTGCCAAGGGAGTGAGACAGGCGATGGCTTTTTTTTTTCTTCG]




>consensus_2452#1
CCGTTTTATTTCTCACTGTTCTTTTCCAATTTCAAACACCATAAGCATCAGTTTTTGGGA
GGGGGCAAATTGTGTGAAAAATTTGTGTACATTTGACATACGATTCTAAAGTATAAATAA
TCCCAAGCTCTATCTATATAACTCTGTTTGTTTTGCGGTGGGCAAACCATTGCTTGAGCT
TGTACGTTTCTCTGTTATTCGATTATCTGAGCTATTTGTCTTAATTTGCCTCTAAAGTAC
ATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAAGAGTAAG
AAGCTGAAAGAGAGATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATATTATACTAT
ATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAGTATAAGAAC
AGCACAAGAAAAGTTCACCGTTATATATTTCGCATCACCTAAACTGGTAAAGATAGTTCC
TGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTTTATGAAAGTTTATGTT
ATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTTTACCATATAGCGTAAAGTGAAC
TGTGCCAAGGGAGTGAGACAGGCGATGGCTTTTTTTTTTCTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2452#0      CGCCCGAGGTTTAAGATAGTTCCTGGATTACTTTTCCGTTTAAAAGTTTAATCTTTACAT 60
consensus_2452#1      -----------------------------------CCGTTTTATTTCTCACTGTTCTTTT 25
                                                         ****** *    * * * **    *

consensus_2452#0      TCGGTTTATGAAAGTTTATGTTATGTAACATTGTGGAAGAAATTTTAAACAAACCATTTT 120
consensus_2452#1      CCAATTTCAAACACCATAAGCATCAGTTTTTGGGAGGGGGCAAATTGTGTGAAAAATTTG 85
                       *  ***   * *   ** *          * *  *  *  *  **     **  **** 

consensus_2452#0      TAC-CATATAGCGTAAAGTGAACTGTGCCAAGGAGTGAGACAGGCGATTGCTTTCTTCGT 179
consensus_2452#1      TGTACATTTGACATA-------CGATTCTAAAGTAT-AAATAATCCCAAGCTCTATC--- 134
                      *   *** *  * **       *  * * ** *  * * * *  *    *** * *    

consensus_2452#0      TTTATAACTCTGTTTTTTTCTTGGGAAATTATGTATAGATAGTTTAGTAGCCGACGCCCT 239
consensus_2452#1      TATATAACTCTGTTTGTTTTGCGG-----------TGGGCAAACCATTGCTTGA-GCTTG 182
                      * ************* ***   **           * *  *    * *    ** **   

consensus_2452#0      CTGGTGTTTTTGCTCACCAATGTATAGTGCTCCATTGAATTTGTTTGTACCAATAATACT 299
consensus_2452#1      TACGTTTCTCTGTTATTCGATTATCTGAGCTAT-TTGTCTTAATTTGCCTCTAAAGTAC- 240
                         ** * * ** *   * **     * ***   ***  **  ****   * * * *** 

consensus_2452#0      CATCTCACACACACTCACATGCTCGGCTACTACACACATACGCACAAGGCAAGGATCGAG 359
consensus_2452#1      -ATTGTAATCATTCTCCTATAATCATTTGTTGACTGCTTGCTAATCGAATAAAA---GAG 296
                       **   *  **  ***  **  **   *  *     * * *  *      **     ***

consensus_2452#0      TTGGTGTGGCCGAAGTAGAGCGAGTTGTTGANCGATAGATTTANAAAAAAATCAATCAAA 419
consensus_2452#1      TAAGA--AGCTGAAAGAGAG---ATTAGCACGACACAGAAGTAGAAAAAGTAGAAATATA 351
                      *  *    ** ***  ****    **        * ***  ** *****    **  * *

consensus_2452#0      ACAAAACAAA-AAAGTANCAACGAAACACCTANGCTTNCAGTGC-TCAACTGACACCCTG 477
consensus_2452#1      TTATACTATATAAAGAAATTAAAAAACAAATACACATTAGCTTCATCATAAGGGGAAGAG 411
                        * *  * * **** *   *  *****  **  * *    * * ***   *       *

consensus_2452#0      TACAGAAAACCGCATGTGGTGGAGTGTTTGTACAATAAAAGGAATCCGTATCATATATCC 537
consensus_2452#1      TATA-AGAACAGCACAAGAAAAGTTCACCGTTATATAT------TTCGCATCACCTAAAC 464
                      ** * * *** ***   *      *    **   ***       * ** ****  **  *

consensus_2452#0      TGCACATCCTGCTCAAANGACCCCCNTCCCGGACCAAACACCTTGGGGACATGGACCAAA 597
consensus_2452#1      TGGTAAAGATAGTTCCTGGATTATTTTTCCGTTTAAAAGTTTTAATCTTTATATTCGGTT 524
                      **   *   *  *     **      * ***    ***    *       **   *    

consensus_2452#0      CG-GACTGGACACNTNGCGAAGCACCAGGAAAAAACGGGANAAAACACAANAANTCAAGA 656
consensus_2452#1      TATGAAAGTTTATGTTATGTAACATTGTGGAAGAA--ATTTTAAACAAACCATTTT---- 578
                         **  *   *  *   * * **    * ** **       ***** *  *  *     

consensus_2452#0      CACCACA-GGCCTGGAAGGCGCGAAAACAAACAACCACAAAACNCGCAACGGCCGAACCA 715
consensus_2452#1      TACCATATAGCGTAAAGTGAACTGTGCCAAGGGA--GTGAGACAGGCGATGGCTTTTTTT 636
                       **** *  ** *  *  *  *     ***   *     * **  ** * ***       

consensus_2452#0      AACAGGTCGAGNGACCCGANCCAACGAACGGGAAACANGGACANAGAGACCACNAG 771
consensus_2452#1      TTTCT-TCG----------------------------------------------- 644
                            ***