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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGTTCTTTTCATACTTAACTGATCTGCATAATATGTTAATATTTGCTACCCATATAGTTATTAACATCGCTTAAAAATCTAGTGCTTTGTTATCGTTTGGTGTGAACTGTTACAAGTCTATGCTAGTGGTAGTACTGTTGCGCCATCGTATACTATCCTCCAAAACCACACATTCACACAAACACACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTACAAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAGGTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCTGTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAAGCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCATAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCATATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACATATACAAACAAACACCTATATATATATATATATATATACACATACCATATTCAAAGCGTGGATAGAAGATGAAAGGACGAAACGCGGCCACG]
[+] EMBL BM654377 [CCGTTCTTTTCATACTTAACTGATCTGCATAATATGTTAATATTTGCTACCCATATAGTTATTAACATCGCTTAAAAATCTAGTGCTTTGTTATCGTTTGGTGTGAACTGTTACAAGTCTATGCTAGTGGTAGTACTGTTGCGCCATCGTATACTATCCTCCAAAACCACACATTCACACAAACACACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTACAAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAGGTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCTGTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAAGCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCATAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCATATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACATATACAAACAAACACCTATATATATATATATATATATACACATACCATATTCAAAGCGTGGATAGAAGATGAAAGGACGAAACGCGGCCACG]
consensusID : consensus_246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CCGCCCACGCGTCCGCACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTACAAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAGGTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCTGTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAAGCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCATAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCATATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACATATACAAACAAACACCTATATATATATATATATATATACACATACAATATCAAAGCGTGGATAGAAGATGAAAGGACGAAACGCGGCCACGTGGCTAGGACAGAGCAAACAACGAAAACGAAACACTAACATCACACAAAACTGTACATGTGAGCGTGTGTGTGTGTGTGTATGTGTGTATGTCCCATCTATAGACTTTTTAGACTGATTTGCCCGCCCCGCTCTGGTGTGTGGTGAGACCAAA]
[+] EMBL BM626989 [CCGCCCACGCGTCCGCACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTACAAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAGGTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCTGTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAAGCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCATAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCATATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACATATACAAACAAACACCTATATATATATATATATATATACACATACAATATCAAAGCGTGGATAGAAGATGAAAGGACGAAACGCGGCCACGTGGCTAGGACAGAGCAAACAACGAAAACGAAACACTAACATCACACAAAACTGTACATGTGAGCGTGTGTGTGTGTGTGTATGTGTGTATGTCCCATCTATAGACTTTTTAGACTGATTTGCCCGCCCCGCTCTGGTGTGTGGTGAGACCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_246#0 CCGTTCTTTTCATACTTAACTGATCTGCATAATATGTTAATATTTGCTACCCATATAGTT 60
consensus_246#1 ------------------------------------------------------------
consensus_246#0 ATTAACATCGCTTAAAAATCTAGTGCTTTGTTATCGTTTGGTGTGAACTGTTACAAGTCT 120
consensus_246#1 ------------------------------------------------------------
consensus_246#0 ATGCTAGTGGTAGTACTGTTGCGCCATCGTATACTATCCTCCAAAACCACACATTCACAC 180
consensus_246#1 --------------------------------------------------CCGCCCACGC 10
* *** *
consensus_246#0 AAACACACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTAC 240
consensus_246#1 GTCCGCACACACACAAACACACCTTTACAAACTAATCGTGGTGTACAAATTATGGTGTAC 70
* *******************************************************
consensus_246#0 AAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAG 300
consensus_246#1 AAAAACAAAAACCCCAACAAATCAAACCAGCAACAGTTTCAATTCAGTACAGTCGAAAAG 130
************************************************************
consensus_246#0 GTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCT 360
consensus_246#1 GTGTTTCGGTTGGAGCGCTTTAGACTGCTGCGGCTTGTGTGAATCGAAACTTACCACCCT 190
************************************************************
consensus_246#0 GTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAA 420
consensus_246#1 GTGCGTAGTACTACTACGCCCAGTGGAAGTGAAGCCCAGACCTGATCGGCGTAATACAAA 250
************************************************************
consensus_246#0 GCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCA 480
consensus_246#1 GCATAAAAGAAGAAGGATAAAGATTACTATCACGTTTATATTTTAATCGCATCAAATGCA 310
************************************************************
consensus_246#0 TAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCAT 540
consensus_246#1 TAACCGAGTACTTGAAAACAAACACGGATGGTGGAGCGACCAACCTCCGATGGATATCAT 370
************************************************************
consensus_246#0 ATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACAT 600
consensus_246#1 ATTCGAGCCAGTTATTGAAAGAGAAAGCAACCCTATAAATGAATACTAATATATATACAT 430
************************************************************
consensus_246#0 ATACAAACAAACACCTATATATATATATATATATATACACATACCATATTCAAAGCGTGG 660
consensus_246#1 ATACAAACAAACACCTATATATATATATATATATATACACATACAATAT-CAAAGCGTGG 489
******************************************** **** **********
consensus_246#0 ATAGAAGATGAAAGGACGAAACGCGGCCACG----------------------------- 691
consensus_246#1 ATAGAAGATGAAAGGACGAAACGCGGCCACGTGGCTAGGACAGAGCAAACAACGAAAACG 549
*******************************
consensus_246#0 ------------------------------------------------------------
consensus_246#1 AAACACTAACATCACACAAAACTGTACATGTGAGCGTGTGTGTGTGTGTGTATGTGTGTA 609
consensus_246#0 ------------------------------------------------------------
consensus_246#1 TGTCCCATCTATAGACTTTTTAGACTGATTTGCCCGCCCCGCTCTGGTGTGTGGTGAGAC 669
consensus_246#0 ----
consensus_246#1 CAAA 673
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||