cluster # 2469

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Anopheles gambiae
cluster # 2469 cluster # 2469 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2469#0 length = 543 sequences # 1

consensus_2469#1 length = 433 sequences # 1

consensusID : consensus_2469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [CGTGTCCAGCAGAATCGGCCACGAGGGTTAAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCTTCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCAGCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGGCNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGATACAGGTCGTG]

[+] EMBL BX469493             [CGTGTCCAGCAGAATCGGCCACGAGGGTTAAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCTTCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCAGCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGGCNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGATACAGGTCGTG]




>consensus_2469#0
CGTGTCCAGCAGAATCGGCCACGAGGGTTAAACGTTCGTCTCGGCGGGCGCTGCTCGCTC
TGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGG
TGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGTGCTGATGT
ACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGT
TCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGAGTGGAAAC
GTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCTTCCAAGAG
TCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCAGCTTACCG
GCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGGCNTGCGTG
TACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGATACAGGTC
GTG

consensusID : consensus_2469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGTGCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCATCTTTGGCGTGGCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGGACGCGCCGTCGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCGGTCGTGCAGAATCGAGCCAGCGCGCTTCCAAGAGTCCAAAGTACCC]

[+] EMBL AL930427             [ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGTGCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCATCTTTGGCGTGGCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGGACGCGCCGTCGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCGGTCGTGCAGAATCGAGCCAGCGCGCTTCCAAGAGTCCAAAGTACCC]




>consensus_2469#1
ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGT
GCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCT
GCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCG
GGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCATCTTTGGCGTGGCACCTCGGTGC
TGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGTCG
TACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGGACGCGCCGTCGGAAGGAGTGG
AAACGTCGGCTGTACAGAACGTCGTCGGTCGTGCAGAATCGAGCCAGCGCGCTTCCAAGA
GTCCAAAGTACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2469#0      ------------------------------------------------------------
consensus_2469#1      ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGT 60
                                                                                  

consensus_2469#0      -----CGTGTCCAGCAGAATCGGCCACGAG---GGTTAAACGTTCGTCTCGGCGGGCGCT 52
consensus_2469#1      GCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCT 120
                           * *     ** *       * ***    ***  **********************

consensus_2469#0      GCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCG 112
consensus_2469#1      GCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCG 180
                      ************************************************************

consensus_2469#0      GGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGT 172
consensus_2469#1      GGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGC-ATCTTTGGCGTGGC-ACCTCGGT 238
                      ************************************ ************** ********

consensus_2469#0      GCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGT 232
consensus_2469#1      GCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGT 298
                      ****************************** *****************************

consensus_2469#0      CGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGA 292
consensus_2469#1      CGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGG-ACGCGCCGTCGG-AAGGA 356
                      ************************************ **** ************ *****

consensus_2469#0      GTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCT 352
consensus_2469#1      GTGGAAACGTCGGCTGTACAGAACGTCGTCGG--TCGTGCAGAATCGAGCCAG-CGCGCT 413
                      ****************************** *   ****************** ******

consensus_2469#0      TCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCA 412
consensus_2469#1      TCCAAGAGTCCAAAGTACCC---------------------------------------- 433
                      ********************                                        

consensus_2469#0      GCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGG 472
consensus_2469#1      ------------------------------------------------------------
                                                                                  

consensus_2469#0      CNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGA 532
consensus_2469#1      ------------------------------------------------------------
                                                                                  

consensus_2469#0      TACAGGTCGTG 543
consensus_2469#1      -----------