cluster # 2475

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Anopheles gambiae
cluster # 2475 cluster # 2475 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2475#0 length = 468 sequences # 1

consensus_2475#1 length = 286 sequences # 1

consensusID : consensus_2475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [CGGCACGAGGGTGTAAGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATGCTTTTCCGTGCACTACGTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGTGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAAGGTGTCTCATTAGTCTAGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATAATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGGGGAAAGGTAGTCTATTCGACGTGTCACAGTAGTGGGTGGCACCGCGACTGCTAGNACACAGACACCCGGATACAATTACAAGTCCACTCTGGCGTCGTGCTGTGTCCGTCGCCTCNCACGGTANGCACAGGCGAGGCAACAGGCAGCAGGGAGCCCGAGATTGCGACTCGGCTTGTCCCTACNG]

[+] EMBL BX469687             [CGGCACGAGGGTGTAAGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATGCTTTTCCGTGCACTACGTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGTGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAAGGTGTCTCATTAGTCTAGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATAATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGGGGAAAGGTAGTCTATTCGACGTGTCACAGTAGTGGGTGGCACCGCGACTGCTAGNACACAGACACCCGGATACAATTACAAGTCCACTCTGGCGTCGTGCTGTGTCCGTCGCCTCNCACGGTANGCACAGGCGAGGCAACAGGCAGCAGGGAGCCCGAGATTGCGACTCGGCTTGTCCCTACNG]




>consensus_2475#0
CGGCACGAGGGTGTAAGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATGC
TTTTCCGTGCACTACGTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGTG
TGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAAG
GTGTCTCATTAGTCTAGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATAAT
CGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGGGGAAAGGTAGTCTATT
CGACGTGTCACAGTAGTGGGTGGCACCGCGACTGCTAGNACACAGACACCCGGATACAAT
TACAAGTCCACTCTGGCGTCGTGCTGTGTCCGTCGCCTCNCACGGTANGCACAGGCGAGG
CAACAGGCAGCAGGGAGCCCGAGATTGCGACTCGGCTTGTCCCTACNG

consensusID : consensus_2475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [CCGGTGCGTGTTGTGTTGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATGCTTTTCCGTGCACTTCTTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGTGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAAGGTGTCTCATTAATCTGTGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATAATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGG]

[+] EMBL BM595746             [CCGGTGCGTGTTGTGTTGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATGCTTTTCCGTGCACTTCTTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGTGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAAGGTGTCTCATTAATCTGTGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATAATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGG]




>consensus_2475#1
CCGGTGCGTGTTGTGTTGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAATG
CTTTTCCGTGCACTTCTTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCGT
GTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAAA
GGTGTCTCATTAATCTGTGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGATA
ATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2475#0      -CGGCACGAGG-GTGTAAGGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAAT 58
consensus_2475#1      CCGGTGCGTGTTGTGTT-GGTGAAACTGGTCCATATTTTGGAACGAAACTATTTTGTAAT 59
                       ***  ** *  ****  ******************************************

consensus_2475#0      GCTTTTCCGTGCACTACGTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCG 118
consensus_2475#1      GCTTTTCCGTGCACTTCTTGCGTACGTGCCCCGTAAGTGAGTTCGTGCGTGCCGTCGCCG 119
                      *************** * ******************************************

consensus_2475#0      TGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAA 178
consensus_2475#1      TGTGGTGCAGATAAAACCCGTTTCTTCACGTGAGCTGCGTGAAAAAAAGTGTGTGGCCAA 179
                      ************************************************************

consensus_2475#0      AGGTGTCTCATTAGTCTA-GTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGAT 237
consensus_2475#1      AGGTGTCTCATTAATCTGTGTGTGTGTGTGTGCGTTACCATGTTTATCTTCTGTGCTGAT 239
                      ************* ***  *****************************************

consensus_2475#0      AATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGGGGAAAGGTAGTCT 297
consensus_2475#1      AATCGTACAGCATTCCCGTGATCTTTGTTCACCGTACGGAGGGGAGG------------- 286
                      ***********************************************             

consensus_2475#0      ATTCGACGTGTCACAGTAGTGGGTGGCACCGCGACTGCTAGNACACAGACACCCGGATAC 357
consensus_2475#1      ------------------------------------------------------------
                                                                                  

consensus_2475#0      AATTACAAGTCCACTCTGGCGTCGTGCTGTGTCCGTCGCCTCNCACGGTANGCACAGGCG 417
consensus_2475#1      ------------------------------------------------------------
                                                                                  

consensus_2475#0      AGGCAACAGGCAGCAGGGAGCCCGAGATTGCGACTCGGCTTGTCCCTACNG 468
consensus_2475#1      ---------------------------------------------------