cluster # 2478

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Anopheles gambiae
cluster # 2478 cluster # 2478 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2478#0 length = 733 sequences # 1

consensus_2478#1 length = 662 sequences # 1

consensusID : consensus_2478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTTACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACGAGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGTTCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACGAGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTGTGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCA]

[+] EMBL BM633011             [CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTTACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACGAGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGTTCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACGAGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTGTGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCA]




>consensus_2478#0
CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTT
ACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACG
AGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGT
TCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACG
AGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTG
TGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATA
CCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCT
GCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAAC
ACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAA
CGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGA
AGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGC
CCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGC
AGCACCAGCAGCA

consensusID : consensus_2478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCAACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGCAGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACCAGCCCCTGA]

[+] EMBL BM583242             [CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCAACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGCAGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACCAGCCCCTGA]




>consensus_2478#1
CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTC
CAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAG
TCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAA
CACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCA
GCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGAC
GGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCT
GGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGA
GCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGCAACAGCA
GCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCAACCAGCA
ACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGCAGTGCCA
CCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACCAGCCCCT
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2478#0      CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTT 60
consensus_2478#1      ------------------------------------------------------------
                                                                                  

consensus_2478#0      ACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACG 120
consensus_2478#1      ------------------------------------------------------------
                                                                                  

consensus_2478#0      AGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGT 180
consensus_2478#1      ------------------------------------------------------------
                                                                                  

consensus_2478#0      TCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACG 240
consensus_2478#1      ------------------------------------------------------------
                                                                                  

consensus_2478#0      AGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTG 300
consensus_2478#1      ------------------------------------------------------------
                                                                                  

consensus_2478#0      TGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATA 360
consensus_2478#1      -------CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATA 53
                             **  * * **  *  **************************************

consensus_2478#0      CCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCT 420
consensus_2478#1      CCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCT 113
                      ************************************************************

consensus_2478#0      GCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAAC 480
consensus_2478#1      GCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAAC 173
                      ************************************************************

consensus_2478#0      ACAACAACA------------ACAACAACAACAACAGTCTTCAGATCAACAACAATCACC 528
consensus_2478#1      ACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACC 233
                      *********            ***************************************

consensus_2478#0      TCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCA 588
consensus_2478#1      TCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCA 293
                      ************************************************************

consensus_2478#0      TAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGC 648
consensus_2478#1      TAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGC 353
                      ************************************************************

consensus_2478#0      TGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGC 708
consensus_2478#1      TGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGC 413
                      ************************************************************

consensus_2478#0      TGGCTGAGCCGCAGCACCAGCAGCA----------------------------------- 733
consensus_2478#1      TGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGC 473
                      *************************                                   

consensus_2478#0      ------------------------------------------------------------
consensus_2478#1      AACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCA 533
                                                                                  

consensus_2478#0      ------------------------------------------------------------
consensus_2478#1      ACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGC 593
                                                                                  

consensus_2478#0      ------------------------------------------------------------
consensus_2478#1      AGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACC 653
                                                                                  

consensus_2478#0      ---------
consensus_2478#1      AGCCCCTGA 662