cluster # 2479

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2479 cluster # 2479 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2479#0 length = 681 sequences # 1

consensus_2479#1 length = 85 sequences # 1

consensusID : consensus_2479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTCGGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACACACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAATGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAATGAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCAGAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCATTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTACGAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACACTGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCACCTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTAACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCGGATGCCTGGGGATATCTGCTC]

[+] EMBL AL930541             [GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTCGGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACACACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAATGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAATGAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCAGAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCATTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTACGAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACACTGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCACCTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTAACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCGGATGCCTGGGGATATCTGCTC]




>consensus_2479#0
GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTC
GGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACAC
ACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAA
TGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAAT
GAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCA
GAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCA
TTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTAC
GAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACAC
TGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCAC
CTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTA
ACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCG
GATGCCTGGGGATATCTGCTC

consensusID : consensus_2479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATGAT]

[+] EMBL BM592295             [CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATGAT]




>consensus_2479#1
CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCA
TATATGCACTGGATGATGGGATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2479#0      GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTC 60
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACAC 120
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      ACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAA 180
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      TGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAAT 240
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCA 300
consensus_2479#1      --------------------------------CCGGGATTAGGAGAGGAGGGAGTATG-- 26
                                                        ****  * * *  *  *** ** *  

consensus_2479#0      GAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCA 360
consensus_2479#1      -GCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATG-A 84
                          * ********************* ****************************** *

consensus_2479#0      TTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTAC 420
consensus_2479#1      T----------------------------------------------------------- 85
                      *                                                           

consensus_2479#0      GAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACAC 480
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      TGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCAC 540
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      CTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTA 600
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      ACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCG 660
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GATGCCTGGGGATATCTGCTC 681
consensus_2479#1      ---------------------