cluster # 2482

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Anopheles gambiae
cluster # 2482 cluster # 2482 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2482#0 length = 973 sequences # 1

consensus_2482#1 length = 620 sequences # 1

consensusID : consensus_2482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 973
fasta sequence

                              [GGCCAAGAATCGGCACGNGGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACCAACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCAAATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGACTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAAAAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAAAGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCCTACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAANGAGNTCAGNCACGCGGNCT]

[+] EMBL BX467174             [GGCCAAGAATCGGCACGNGGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACCAACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCAAATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGACTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAAAAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAAAGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCCTACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAANGAGNTCAGNCACGCGGNCT]




>consensus_2482#0
GGCCAAGAATCGGCACGNGGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATAT
GGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGT
CGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACG
ATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGC
CCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGC
AGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTC
CCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGG
TACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCG
GCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGG
AACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACCAACAATC
CGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCAAATCGAA
CACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGACTGCGTC
CTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAAAAACCGC
TAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAAAGGGGAG
GTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCCTACATTG
ANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAANGAGNTC
AGNCACGCGGNCT

consensusID : consensus_2482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATGGTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGG]

[+] EMBL BM595706             [CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATGGTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGG]




>consensus_2482#1
CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATG
GTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTAT
CTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACG
GTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTC
TCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAAC
GAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTT
CTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAAT
CCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAG
CCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACG
ACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAAT
CAGCTGGAACGGACAGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2482#0      ------------------------------------------------------------
consensus_2482#1      CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATG 60
                                                                                  

consensus_2482#0      -----GGCCAAGAATCGGCACGNG--GAAGATGCTGAACTCGAACACGCGCAACCCGTAT 53
consensus_2482#1      GTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTAT 120
                           ** **   * * ***** *  **********************************

consensus_2482#0      CTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACG 113
consensus_2482#1      CTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACG 180
                      ************************************************************

consensus_2482#0      GTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTC 173
consensus_2482#1      GTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTC 240
                      ************************************************************

consensus_2482#0      TCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAAC 233
consensus_2482#1      TCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAAC 300
                      ************************************************************

consensus_2482#0      GAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTT 293
consensus_2482#1      GAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTT 360
                      ************************************************************

consensus_2482#0      CTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAAT 353
consensus_2482#1      CTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAAT 420
                      ************************************************************

consensus_2482#0      CCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAG 413
consensus_2482#1      CCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAG 480
                      ************************************************************

consensus_2482#0      CCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACG 473
consensus_2482#1      CCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACG 540
                      ************************************************************

consensus_2482#0      ACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAAT 533
consensus_2482#1      ACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAAT 600
                      ************************************************************

consensus_2482#0      CAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACC 593
consensus_2482#1      CAGCTGGAACGGACAGCCGG---------------------------------------- 620
                      ********************                                        

consensus_2482#0      AACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCA 653
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      AATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGA 713
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      CTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAA 773
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      AAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAA 833
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      AGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCC 893
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      TACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAA 953
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      NGAGNTCAGNCACGCGGNCT 973
consensus_2482#1      --------------------