cluster # 2484

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Anopheles gambiae
cluster # 2484 cluster # 2484 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2484#0 length = 689 sequences # 1

consensus_2484#1 length = 506 sequences # 1

consensusID : consensus_2484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGCTAAGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCAGCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTTCCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTCGTATGCAAATATATATATTTATATATATATA]

[+] EMBL BM577470             [CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGCTAAGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCAGCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTTCCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTCGTATGCAAATATATATATTTATATATATATA]




>consensus_2484#0
CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACAC
CAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAA
ATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTT
TCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGA
TTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGA
TACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGCTAAGTGTTTAAACT
ACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGTGT
GTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGA
AGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCAGC
AGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTTCC
CCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTCGT
ATGCAAATATATATATTTATATATATATA

consensusID : consensus_2484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [AGATCGCCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGTTAGTATTCTACTATGT]

[+] EMBL AL930581             [AGATCGCCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGCAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAACTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGTGTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGGGCCGTGCTGTTAGTATTCTACTATGT]




>consensus_2484#1
AGATCGCCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACACCAGC
AAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAAATTGT
TATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTTTCACA
GACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGATTAGC
AGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGATACAA
TCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAACTACC
CCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGTGTGTG
CGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAAGAAGG
GCCGTGCTGTTAGTATTCTACTATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2484#0      CCGAGACGGATGTGTGTCGAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACAC 60
consensus_2484#1      ---AGATCG-CCCGAGGTTAACTTTCTTCACAAATTACAAAAGAAATCTATAAATTACAC 56
                         ***  *    * *   *****************************************

consensus_2484#0      CAGCAAAACTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAA 120
consensus_2484#1      CAGCAAA-CTGTTCCCCGAATTACTGTAAACCTTTCATAGTGCGTTCGAAACCCTTCGAA 115
                      ******* ****************************************************

consensus_2484#0      ATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTT 180
consensus_2484#1      ATTGTTATCCTGAGTGGCACCATCCGCACGGACAGGGTCCGATTTGCATTGATCCATTTT 175
                      ************************************************************

consensus_2484#0      TCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGA 240
consensus_2484#1      TCACAGACAGCCATTGTGAAAAAGTGAAGCTGGAAGGCTGGTGACGACGAGCAGCATCGA 235
                      ************************************************************

consensus_2484#0      TTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGA 300
consensus_2484#1      TTAGCAGGGCACATAACACACCAGCTGCGATCGGGCTGTGTGGACTGCGGCCGAGTGAGA 295
                      ************************************************************

consensus_2484#0      TACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTG-CTAAG-TGTTTAAA 358
consensus_2484#1      TACAATCAACTGATGTGTGGATTTAGGTAATAATAATTTCGCTTGGCTAAGGTGTTTAAA 355
                      ********************************************* ***** ********

consensus_2484#0      CTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGAAAAGTGCAAAAGTGTAAGT 418
consensus_2484#1      CTACCCCGACAAGGCTCGTAATCAATCGTCGTGTGGACTGGAAAGTGCAAAAGTGTAAGT 415
                      **************************************** *******************

consensus_2484#0      GTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAA 478
consensus_2484#1      GTGTGCGTGTGTGCATGTGTGAATCGCATTTGGCTGGTATAGTGGTAGTGGTGTAAAGAA 475
                      ************************************************************

consensus_2484#0      GAAGGGCCGTGCTGCCAGTATTCTACTATGTGACGTTTGAGCGATCGATTAGCGTTTCCA 538
consensus_2484#1      GAAGGGCCGTGCTGTTAGTATTCTACTATGT----------------------------- 506
                      **************  ***************                             

consensus_2484#0      GCAGTGTGATTTTTGTTTTCATTTTTGCTACCATCCTCAACCAAAAATAACAACTAGTTT 598
consensus_2484#1      ------------------------------------------------------------
                                                                                  

consensus_2484#0      CCCCCAACACGGGCATACATTTAACAGTGGAAAGTGTGAGAATTGTGTGCACCATTTGTC 658
consensus_2484#1      ------------------------------------------------------------
                                                                                  

consensus_2484#0      GTATGCAAATATATATATTTATATATATATA 689
consensus_2484#1      -------------------------------