cluster # 2485

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Anopheles gambiae
cluster # 2485 cluster # 2485 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2485#0 length = 689 sequences # 1

consensus_2485#1 length = 529 sequences # 1

consensusID : consensus_2485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGCCCACGCGTCCGGGGCGCCAAAATGGCCACAGCCACGGAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACGATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAAAGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTGTTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGGTGTGGTCAATT]

[+] EMBL BM623489             [CCGCCCACGCGTCCGGGGCGCCAAAATGGCCACAGCCACGGAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACGATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAAAGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTGTTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGGTGTGGTCAATT]




>consensus_2485#0
CCGCCCACGCGTCCGGGGCGCCAAAATGGCCACAGCCACGGAAAAGCAGGAAATAGACGT
CATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCC
GGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAG
CGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCG
CAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTA
CGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTT
TGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCA
CTTGCCGGAGGGGTGCGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGT
ACGTTAGGATCGGTAACGATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGG
TGCAGGAGGCGGATGAAAAGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCG
TCGGGGTAAACGTGTTTGTTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACT
GAATTGTAATTTTTATGGTGTGGTCAATT

consensusID : consensus_2485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCGCCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG]

[+] EMBL BM585056             [CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCGCCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAGATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATCCGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATCGCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAAGTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTACCAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAGTCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGGACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG]




>consensus_2485#1
CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCG
CCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAG
ATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATC
CGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATC
GCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAA
GTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTAC
CAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAG
TCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGG
ACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2485#0      ---------------------------------------CCGCCCACGCGTCCG-GGGCG 20
consensus_2485#1      CCGCCCACGCGTCCGAACACATCCTACATACCGAAACATCAACAAACGCAAACAAGGGCG 60
                                                             *  *  ****   *  *****

consensus_2485#0      CCAAAATGGCCACAGCCACGG-AAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAG 79
consensus_2485#1      CCAAAATGGCCACAGCCACGGTAAAAGCAGGAAATAGACGTCATCGTCGAGATGATGGAG 120
                      ********************* **************************************

consensus_2485#0      ATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATC 139
consensus_2485#1      ATCTACATCAACTCCATCCTGTACAAGCGCAAACTCTACCCGGAGGCAATATTTCGCATC 180
                      ************************************************************

consensus_2485#0      CGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATC 199
consensus_2485#1      CGCAAGGCGTACAACATCCCGGTGTACATTTCCATCTACAGCGCGCTGAACGACTACATC 240
                      ************************************************************

consensus_2485#0      GCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAA 259
consensus_2485#1      GCGCAAACGTTAAAAGCTGTCCGGGAAATGTTACGAAACCGCAAGGTGCGACGGCTGGAA 300
                      ************************************************************

consensus_2485#0      GTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTAC 319
consensus_2485#1      GTGATCCTATTCGAGGAGGAAGACAATCCCCTGGAAAGCTACGTGTTTAACCTAGACTAC 360
                      ************************************************************

consensus_2485#0      CAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAG 379
consensus_2485#1      CAGCGGCTGGCGAGGGAGAGCGATGAACACATGAGTGCGTTTGAGGAGGAGCTCCGACAG 420
                      ************************************************************

consensus_2485#0      TCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGG- 438
consensus_2485#1      TCGTTGCTGGCGTTGGATGCTCGTATGAAGAATTTAAAGCACTTGCCGGAGGGGTGCGGG 480
                      *********************************************************** 

consensus_2485#0      ACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAGGATCGGTAACG 498
consensus_2485#1      ACGTTAAGTTCAAAATTTTGCTACACACAACGGAATCGGCGTACGTTAG----------- 529
                      *************************************************           

consensus_2485#0      ATCCCCGCCTGCAGAACTTCCCCTTCGTGAAGGAGGTGGCGGTGCAGGAGGCGGATGAAA 558
consensus_2485#1      ------------------------------------------------------------
                                                                                  

consensus_2485#0      AGTCCAGAATCGAGCTGTTGCCGGTGCTGCAGACGTCCTGCGTCGGGGTAAACGTGTTTG 618
consensus_2485#1      ------------------------------------------------------------
                                                                                  

consensus_2485#0      TTGAAGAGTATGGTGGGATGTGATACGTGTGCGTGCTGAACTGAATTGTAATTTTTATGG 678
consensus_2485#1      ------------------------------------------------------------
                                                                                  

consensus_2485#0      TGTGGTCAATT 689
consensus_2485#1      -----------