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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGCTACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTCGTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAGTATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTTGTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTTCAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATTCAAAAGATTTCAATAGCCAAACCTAGAAGAGTAGTTGCAGCTCACTGGCGATGCTATGTGGCACATGAGAACACATTTGGGGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTGCGTACCCATCGTACATCACTTGCTG]
[+] EMBL BM595621 [CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGCTACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTCGTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAGTATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTTGTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTTCAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATTCAAAAGATTTCAATAGCCAAACCTAGAAGAGTAGTTGCAGCTCACTGGCGATGCTATGTGGCACATGAGAACACATTTGGGGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTGCGTACCCATCGTACATCACTTGCTG]
consensusID : consensus_2487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCGACAATGGGACCGACAAACAGGTAAAAAAACCCAGCAAACAGCAGATGTATCCCCGGTTGCTCCCGGCAGACGATCCAGCGGGACGTGCGAAGGTATGGCCAGTGCCATAAACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAAGCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCCATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGATGCGGTCCGCGATCAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGCGATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTTCAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC]
[+] EMBL CNS08HKU [GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCGACAATGGGACCGACAAACAGGTAAAAAAACCCAGCAAACAGCAGATGTATCCCCGGTTGCTCCCGGCAGACGATCCAGCGGGACGTGCGAAGGTATGGCCAGTGCCATAAACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAAGCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCCATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGATGCGGTCCGCGATCAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGCGATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTTCAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2487#0 CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGC 60
consensus_2487#1 ------------------------------------------------------------
consensus_2487#0 TACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTC 120
consensus_2487#1 ------------------------------------------------------------
consensus_2487#0 GTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAG 180
consensus_2487#1 ------------------------------------------------------------
consensus_2487#0 TATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTT 240
consensus_2487#1 --------------GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTT 46
** ******************* ********* *************
consensus_2487#0 CCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCC 300
consensus_2487#1 CCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCC 106
************************************************************
consensus_2487#0 AGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCG 360
consensus_2487#1 AGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCG 166
************************************************************
consensus_2487#0 TAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTT 420
consensus_2487#1 TAGTTAGTCGTATCCCTCACATAGCCGACAATGG-GACCGACAAACAGGTAAAAAAACCC 225
************************** **** ** * * * * *
consensus_2487#0 GTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTT 480
consensus_2487#1 AGCAA-ACAGCAGATGTATCCCCGGTTGC--TCCCGGCAGACGATCCAGCGGGACGTGCG 282
* ** * * ** * * * * * * * *** ** *
consensus_2487#0 CAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATT--CAA 538
consensus_2487#1 AAGGTATGGCCAGTGCCATAA-ACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAA 341
*** * * ** * * * * *** * * * ***
consensus_2487#0 AAGATTTCAATAGCCAAACC-------TAGAAGAGTAGTTGCAGCTCAC-TGGCGATGCT 590
consensus_2487#1 GCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCC 401
*** * * *** ** * **** ** * * * * * * **
consensus_2487#0 ATGTGGCACATGAGAACACATTTGG-GGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTG 649
consensus_2487#1 ATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGA-TGCGGTCCGCGAT 460
**** * ** *** * ****** * ** * ** ** *** *
consensus_2487#0 CGTACCCATCGTACATCACTTGCTG----------------------------------- 674
consensus_2487#1 CAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGC 520
* ** * *** * ** *
consensus_2487#0 ------------------------------------------------------------
consensus_2487#1 GATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTT 580
consensus_2487#0 ---------------------------------------------------------
consensus_2487#1 CAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC 637
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||