cluster # 2488

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Anopheles gambiae
cluster # 2488 cluster # 2488 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2488#0 length = 624 sequences # 1

consensus_2488#1 length = 427 sequences # 1

consensusID : consensus_2488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTACAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGTTATACAAAAAATAAACCCCTAAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGGAGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCGTGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACGGTGGCACGGTGGAAAACAGCGGCACC]

[+] EMBL BM595613             [CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTACAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGTTATACAAAAAATAAACCCCTAAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGGAGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCGTGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACGGTGGCACGGTGGAAAACAGCGGCACC]




>consensus_2488#0
CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTA
CTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTA
CAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGT
TATACAAAAAATAAACCCCTAAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAA
AGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTA
ATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGTGA
TTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGACGC
TTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGGAG
AGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCGTG
ACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACGGT
GGCACGGTGGAAAACAGCGGCACC

consensusID : consensus_2488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAAGGTACAAATACACACACGCAAGAAGAAAAGTGCACAAGTGTGTGAACGTGTGTGAGTGTTGTTAAATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTAAAGAAAGTCGGTGAAAGATAGTACAAGTGATACGAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT]

[+] EMBL BM643243             [CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAAGGTACAAATACACACACGCAAGAAGAAAAGTGCACAAGTGTGTGAACGTGTGTGAGTGTTGTTAAATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTAAAGAAAGTCGGTGAAAGATAGTACAAGTGATACGAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT]




>consensus_2488#1
CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCA
CTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAAGGTACAAATACACACACGCAA
GAAGAAAAGTGCACAAGTGTGTGAACGTGTGTGAGTGTTGTTAAATAAACGCCTAATAGA
TAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCGCGCCCTATTGGT
TTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGACAGTAG
TGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTAAAGAAAGTCGGTGAAAGATAG
TACAAGTGATACGAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCC
GGTCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2488#0      CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTA 60
consensus_2488#1      ----------------CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTA 44
                                             *  *  *******************************

consensus_2488#0      CTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTA 120
consensus_2488#1      CTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAA-GGTA 103
                      **************************************************** ** ****

consensus_2488#0      CAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGT 180
consensus_2488#1      CAAATACACACACGCAAGAAGAAAAGTGCACAAG--TGTGTGAACGTGTGTGAGTGTTGT 161
                      ******************** *************  ****** *****************

consensus_2488#0      TATACAAAAAATAAACCCCTAA--GATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATA 238
consensus_2488#1      TA-------AATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATA 214
                      **       ******* *****  ************************************

consensus_2488#0      AAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGT 298
consensus_2488#1      AAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGT 274
                      ************* ****** ***************************************

consensus_2488#0      TAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGT 358
consensus_2488#1      TAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGT 334
                      ******************* ********* ******************************

consensus_2488#0      GATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGAC 418
consensus_2488#1      GATTAAAGAAAGTCGGTGAAA-GATAGTACAAGTGATACGAGAACCCCCCGGGACAAGAC 393
                      **** **************** ***************** ********************

consensus_2488#0      GCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGG 478
consensus_2488#1      GCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT-------------------------- 427
                      **********************************                          

consensus_2488#0      AGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCG 538
consensus_2488#1      ------------------------------------------------------------
                                                                                  

consensus_2488#0      TGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACG 598
consensus_2488#1      ------------------------------------------------------------
                                                                                  

consensus_2488#0      GTGGCACGGTGGAAAACAGCGGCACC 624
consensus_2488#1      --------------------------