cluster # 2496

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Anopheles gambiae
cluster # 2496 cluster # 2496 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2496#0 length = 689 sequences # 1

consensus_2496#1 length = 410 sequences # 1

consensusID : consensus_2496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCCCATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATTTATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTACAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATTCGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAAGGTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGTAATGGCTGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAGTAACCTGAACGAGTGAATAGTGTATACGAAAATAAACGAACCACCTTGATCATATGCGATCG]

[+] EMBL BX623771             [ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCCCATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATTTATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTACAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATTCGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAAGGTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGTAATGGCTGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAGTAACCTGAACGAGTGAATAGTGTATACGAAAATAAACGAACCACCTTGATCATATGCGATCG]




>consensus_2496#0
ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCC
CATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATT
TATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTA
CAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATT
CGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAA
GGTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGTAATGGCTGGATGTAGGAGAG
AAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCA
GGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAAT
TGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGAC
TTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGA
TGGTACACTTCGAGACGCTATACGAAGTAACCTGAACGAGTGAATAGTGTATACGAAAAT
AAACGAACCACCTTGATCATATGCGATCG

consensusID : consensus_2496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [ATCGCCCCGAGGTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTGAATAGTGTATACGAACAAATAAAACGAACCACCTTGATC]

[+] EMBL AL930682             [ATCGCCCCGAGGTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTGAATAGTGTATACGAACAAATAAAACGAACCACCTTGATC]




>consensus_2496#1
ATCGCCCCGAGGTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAAT
GGCTGGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTT
ATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTG
TGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGG
ATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAA
TCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAA
AACCGGAGGTGAATAGTGTATACGAACAAATAAAACGAACCACCTTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2496#0      ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCC 60
consensus_2496#1      ------------------------------------------------------------
                                                                                  

consensus_2496#0      CATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATT 120
consensus_2496#1      ------------------------------------------------------------
                                                                                  

consensus_2496#0      TATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTA 180
consensus_2496#1      ------------------------------------------------------------
                                                                                  

consensus_2496#0      CAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATT 240
consensus_2496#1      ------------------------------------------------------------
                                                                                  

consensus_2496#0      CGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAA 300
consensus_2496#1      -------------------------------------------------ATCGCCCCGAG 11
                                                                       **    **** 

consensus_2496#0      G--GTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGT----AATGGCTGG-ATGT 353
consensus_2496#1      GTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGT 71
                      *   ************ *********************   *    ********* ****

consensus_2496#0      AGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGT 413
consensus_2496#1      AGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGT 131
                      ************************************************************

consensus_2496#0      GTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACG 473
consensus_2496#1      GTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACG 191
                      ************************************************************

consensus_2496#0      CGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGT 533
consensus_2496#1      CGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGT 251
                      ************************************************************

consensus_2496#0      GTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTT 593
consensus_2496#1      GTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTT 311
                      ************************************************************

consensus_2496#0      CACTCGATGGTACACTTCGAGACGCTATACGAAG---TAA--CCTGAACGA------GTG 642
consensus_2496#1      CACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTG 371
                      *********************************    ***  **** *  *      ***

consensus_2496#0      AATAGTGTATACGAA--AATAAA-CGAACCACCTTGATCATATGCGATCG 689
consensus_2496#1      AATAGTGTATACGAACAAATAAAACGAACCACCTTGATC----------- 410
                      ***************  ****** ***************