These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGTCCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATATATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAACTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACNGGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTCCCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAAACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGCGGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAGGTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGGGGCCAATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTGATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCGTTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGGGCCTTTATGGGCGCTTCATGGGAGGGTTATTACCCCCCTTTTTGTCCCAAATTTTGGGAACTTTTTCCCAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTTCACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGCTGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAAATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAACAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAATAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGCACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGTGTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCACACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACAGAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCAGAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGTGCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA] [+] EMBL AL930753 [CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGTCCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATATATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAACTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACNGGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTCCCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAAACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGCGGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAGGTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGGGGCCAATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTGATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCGTTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGGGCCTTTATGGGCGCTTCATGGGAGGGTTATTACCCCCCTTTTTGTCCCAAATTTTGGGAACTTTTTCCCAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTTCACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGCTGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAAATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAACAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAATAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGCACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGTGTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCACACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACAGAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCAGAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGTGCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA] consensusID : consensus_2499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [CCGTTAAAAAGTATCTTTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGGGTGTTTACAACTATCCTTCATGAACACAAAAACACAACGAAACATCGCAGACGGAGTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTCATCGCGCGAAGTACGCAAAATAGTCCACCAGTCCATCACTACACCGTCCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCTTTTGTTGGTTAGGGATTAGTTTTAGATCGCATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTTGTTGTTCAAACAAAACCCGGAAAGTCGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTTGTGTCCGTGGGAGTACTATTCCGATCAGTTTTTCCACACTGTCACACTGTCAGATGGAAATACGAAATGTTGGTATCTTACTTCCCCGAGTTCGAACGATGAGTGAAGCTACGCATCGGACATTTTACGCTAGTGTTACAGTTAATGCTTTGCGCGTTCAAAATCGTTATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGAGATCAACCCTAACACAGACAGTTAAATCATTCACTACCACACCCCAAGGAGGATTAATATCCGCCGGACAGTATTTATTAGTAAAGGGTAGCGCAACACC] [+] EMBL BM631724 [CCGTTAAAAAGTATCTTTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGGGTGTTTACAACTATCCTTCATGAACACAAAAACACAACGAAACATCGCAGACGGAGTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTCATCGCGCGAAGTACGCAAAATAGTCCACCAGTCCATCACTACACCGTCCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCTTTTGTTGGTTAGGGATTAGTTTTAGATCGCATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTTGTTGTTCAAACAAAACCCGGAAAGTCGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTTGTGTCCGTGGGAGTACTATTCCGATCAGTTTTTCCACACTGTCACACTGTCAGATGGAAATACGAAATGTTGGTATCTTACTTCCCCGAGTTCGAACGATGAGTGAAGCTACGCATCGGACATTTTACGCTAGTGTTACAGTTAATGCTTTGCGCGTTCAAAATCGTTATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGAGATCAACCCTAACACAGACAGTTAAATCATTCACTACCACACCCCAAGGAGGATTAATATCCGCCGGACAGTATTTATTAGTAAAGGGTAGCGCAACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2499#0 CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGT 60 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 CCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATAT 120 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 ATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAA 180 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 CTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACN 240 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 GGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTC 300 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 CCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAA 360 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 ACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGC 420 consensus_2499#1 -----------------------------------------------------------C 1 * consensus_2499#0 GGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAG 480 consensus_2499#1 CGT-TAAAAAGTATCT--TTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGG 58 ** ** * *** ** * * *** * * ** * * * * * consensus_2499#0 GTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGG 540 consensus_2499#1 GTGTTT----ACAACTATCC-TTCATGAACACAAAAACACAACGAAACATCGCAGACGGA 113 ** ** ****** * ** * **** ** ** * * ** * consensus_2499#0 GGCC-AATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTG 599 consensus_2499#1 GTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTC 173 * ** ** * * *** **** * * *** * * ** * *** consensus_2499#0 ATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCG 659 consensus_2499#1 AT------CGCGCGAAGTACGCAAAATAGT-------CCACCAGTCCATCACTACACCGT 220 ** * * * * *** * ** * * ** * * * ** consensus_2499#0 TTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGG 719 consensus_2499#1 CCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCT-----TTTGTTGGTTAGGGAT 275 * * * * * * ** * * * * ***** ** ** * * consensus_2499#0 GCCTTTATGGGCGCTTCATGGGAGGGT-TATTACCCCCCTTTTTGTCCCAAATTTTGGGA 778 consensus_2499#1 TAGTTTTAGATCG---CATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTT 332 *** * ** *** * ** ** ** *** * *** ** consensus_2499#0 ACTTTTTCC-CAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTT 837 consensus_2499#1 GTTGTTCAAACAAAACCCGGAAAGT---CGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTT 389 * ** ******* ***** * * ** * * * * * *** *** consensus_2499#0 CACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGC 897 consensus_2499#1 GTGTCCGTGGGAGTACTATTCCG-ATCAGTTTTTCCACACTGTCACACTGTCAGATGGAA 448 ** ** * * * ** * * * * * * * * * * * consensus_2499#0 TGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAA 957 consensus_2499#1 ATACGAAATGTTGG-TATCTTACTTCCCCGAGTTCGAA----------CGATGAGTGAAG 497 * * ** * *** ******** ** ** * ** consensus_2499#0 ATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAA 1017 consensus_2499#1 CTACGCATCGGACATTTTACGCTAGTGTTACA-GTTAATGCTTTGCGCGTTCAAAATCGT 556 ** * * * * * ** * * * * * *** * consensus_2499#0 CAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAA 1077 consensus_2499#1 TATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGA- 615 * * * *** * * ** ** * * * *** ** * consensus_2499#0 TAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGC 1137 consensus_2499#1 -GATCAACCCTAACACAGACAGTTAAATCATTCACTACC---ACACCCCAAGGAGGATTA 671 * ** *** * * * * ** ** ** ** * * * * ** consensus_2499#0 ACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGT 1197 consensus_2499#1 ATATCCGCCGGACAGTATTT--ATTAGTAAAGGGTAGCGCAACACC-------------- 715 * * * * * * ** * * *** * ** consensus_2499#0 GTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCA 1257 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 CACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACA 1317 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 GAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCA 1377 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 GAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGT 1437 consensus_2499#1 ------------------------------------------------------------ consensus_2499#0 GCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA 1482 consensus_2499#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||