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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence
[GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTGTCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATACGAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGCATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGATAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGTGNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGAAGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAACCTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAAACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTNCAAACACATCAACATACGAACCTCTCTAACAANAACAAAACAAAACTGGTCGCACACAACAGTGAACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAAACACTTACTTCGTGTAACACACACACACAAGCTCTAACTCATGATNAACANGCTGTCATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCATTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA]
[+] EMBL AL930763 [GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTGTCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATACGAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGCATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGATAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGTGNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGAAGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAACCTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAAACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTNCAAACACATCAACATACGAACCTCTCTAACAANAACAAAACAAAACTGGTCGCACACAACAGTGAACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAAACACTTACTTCGTGTAACACACACACACAAGCTCTAACTCATGATNAACANGCTGTCATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCATTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA]
consensusID : consensus_2500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GCAAGAATCGCCCGAGGGTACGGTGAATGTGCATGGTGAAGCAAATTGTAAATGACACTAAATTGTTGGTATTTTTGNTCCNTTAAACTCTCCAAGAGCAAAGCCAAAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAAAAAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGTTAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACACAACAGTGTAACAAAGAAACAGAATAACTATTCACATAAACGTGTATACAGAAACCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGTATTAAAGCAACC]
[+] EMBL AL931072 [GCAAGAATCGCCCGAGGGTACGGTGAATGTGCATGGTGAAGCAAATTGTAAATGACACTAAATTGTTGGTATTTTTGNTCCNTTAAACTCTCCAAGAGCAAAGCCAAAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAAAAAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGTTAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACACAACAGTGTAACAAAGAAACAGAATAACTATTCACATAAACGTGTATACAGAAACCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGTATTAAAGCAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2500#0 GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTG 60
consensus_2500#1 ------------------------------------------------------------
consensus_2500#0 TCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATAC 120
consensus_2500#1 ------------------------------------------------------------
consensus_2500#0 GAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGC 180
consensus_2500#1 ------------------------------------------------------------
consensus_2500#0 ATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGA 240
consensus_2500#1 ------------------------------------------------------------
consensus_2500#0 TAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGT 300
consensus_2500#1 ------------------------------------------------------------
consensus_2500#0 GNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGA 360
consensus_2500#1 ----------------GCAAGAATCGCCCG---AGGGTACGGTGAAT-GTGCA-TGGTGA 39
**** * * ** ******* ***** ******
consensus_2500#0 AGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAAC 420
consensus_2500#1 AGCAAATT-GTAAA--TGACACTAAA----TTGTT--GGTATTTT---TGNTCCNTTAAA 87
******** **** ********* ***** ******** ** *** ****
consensus_2500#0 CTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAA 480
consensus_2500#1 CTCTCCAAGAGCAAAGCCA-AAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAA 146
** ************ * ** ****** ******************************
consensus_2500#0 ACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTN 540
consensus_2500#1 A-AAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGT 205
* ** ************************ *** * ******* ** *** *
consensus_2500#0 CAAACACATCAACATACGAACCTCTCTAACAANAACAAA---ACAAAACTGGTCGC-ACA 596
consensus_2500#1 TAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACA 265
****** * ** ********** * ** *** ** ****** ******* ***
consensus_2500#0 CAACAGTG-AACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAA 655
consensus_2500#1 CAACAGTGTAACAAAGAAACAGA-----ATAACTATTCACATAAACG-TGTATACAGAAA 319
******** ******* *** * *** ** *** * * ** ** ** **
consensus_2500#0 ACACTTACTTCG-TGTAACACACACACAC--AAGCTCTAACTCATGATNAACANGCT-GT 711
consensus_2500#1 CCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGT 379
*********** **************** * *** * * *** * * *** **
consensus_2500#0 CATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCA 771
consensus_2500#1 ATTAAAGCAACC------------------------------------------------ 391
** *******
consensus_2500#0 TTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA 821
consensus_2500#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||