These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGCGCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGCTGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAGTGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCTGCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCGATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGCAGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAACGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA] [+] EMBL BM583387 [CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGCGCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGCTGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAGTGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCTGCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCGATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGCAGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAACGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA] consensusID : consensus_2509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [CGAGGTTAATAACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAGGTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGAGTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC] [+] EMBL AL930909 [CGAGGTTAATAACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAGGTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGAGTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2509#0 CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGC 60 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 GCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGC 120 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 TGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAG 180 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 TGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCT 240 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 GCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCG 300 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 ATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGC 360 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 AGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAA 420 consensus_2509#1 ------------------------------------------------------------ consensus_2509#0 CGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGG 480 consensus_2509#1 --------------------------------------CGAGGTTAATA-ACACGGGAGG 21 * * * ** ********** consensus_2509#0 GAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAG 540 consensus_2509#1 GAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAG 81 ************************************************************ consensus_2509#0 TGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTT 600 consensus_2509#1 TGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTT 141 ****************** ***************************************** consensus_2509#0 GTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA---------------- 644 consensus_2509#1 GTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAG 201 ******************************************** consensus_2509#0 ------------------------------------------------------------ consensus_2509#1 GTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGA 261 consensus_2509#0 --------------------------------------------------- consensus_2509#1 GTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC 312 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||