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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence
[GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGCCTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCGTCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTACACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAACAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCACACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCACCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGAGCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGTAACGGATCGATCCGTTAAGTTCCCAAGGTATCAGGCAAAGCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCGGAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCGATTCCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGATCTGNGGTTGGGCACAATTCNCCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTGGACACCAACGNAGGGTNA]
[+] EMBL BX467210 [GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGCCTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCGTCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTACACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAACAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCACACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCACCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGAGCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGTAACGGATCGATCCGTTAAGTTCCCAAGGTATCAGGCAAAGCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCGGAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCGATTCCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGATCTGNGGTTGGGCACAATTCNCCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTGGACACCAACGNAGGGTNA]
consensusID : consensus_251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[GGATTTCATTAGAGCCTTATCCTGGTGTTGTTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCCCTTAGCGTAGTTTAGTTCGCAGATCCCATTGTTTTAGAGATGCTCTAATTCTAACATTTACTAGCATCTTTTAGTTACTGTTGCTTACTAATTAACCTATTATCGCTTTGTAATCTAATCATCCACACTCCCTGTAACAAAAAATGTCCCCATGTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTGTTTTAACTATCCTCATCAGAGCTCGGCAAGACGTGTAGGACTGCAATGCTCTAACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCAAGTCGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTCCTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCATTTTATTGTACGTCAGATCGGGCAGCACGATTTGTGAACCAATTTTTCCAAGCCGCTTGAAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG]
[-] EMBL BX622965 [GGATTTCATTAGAGCCTTATCCTGGTGTTGTTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCCCTTAGCGTAGTTTAGTTCGCAGATCCCATTGTTTTAGAGATGCTCTAATTCTAACATTTACTAGCATCTTTTAGTTACTGTTGCTTACTAATTAACCTATTATCGCTTTGTAATCTAATCATCCACACTCCCTGTAACAAAAAATGTCCCCATGTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTGTTTTAACTATCCTCATCAGAGCTCGGCAAGACGTGTAGGACTGCAATGCTCTAACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCAAGTCGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTCCTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCATTTTATTGTACGTCAGATCGGGCAGCACGATTTGTGAACCAATTTTTCCAAGCCGCTTGAAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_251#0 GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTG 60
consensus_251#1 ------------------------------------------------------------
consensus_251#0 CACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAA 120
consensus_251#1 ------------------------------------------------------------
consensus_251#0 CCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCT 180
consensus_251#1 --------------------------------------GGATTTCATTAGAGCCTTATCC 22
* * ** ** * *
consensus_251#0 AACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGC 240
consensus_251#1 TGGTGTTG------TTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCC 76
** ** * ** * ** * * * * ** * ** *
consensus_251#0 CTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCG 300
consensus_251#1 CTTAGCGTAGTT--TAGTTCGCAGATCCCATTGTTTTA-GAGATGCTCTAATTCTAACAT 133
** * * * * * ** * * * * * ** * ** **** ** * **
consensus_251#0 TCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTAC 360
consensus_251#1 TTACT----AGCATCTTTTAGTTACTGTTGCTTACTAATTA----------ACCTATTAT 179
* * *** * * *** * ** *** * * ** **
consensus_251#0 ACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAA 420
consensus_251#1 -CGC------TTTGTAATCTAATCATCCACACTCCCT---GTAACAAAAAATGTCCCCAT 229
*** * * ***** * **** *** * * ** **** **
consensus_251#0 CAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCAC 480
consensus_251#1 GTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTG 289
* * * * * *** * *** * * * *
consensus_251#0 ACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCA 540
consensus_251#1 TTT--TAACTATCCTCATCAG-AGCTCGGCAAGACGTGTAGGACTG---CAATG-CTCTA 342
* * ** ** ** * ** * * * ** * ** * ** * * *
consensus_251#0 CCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGA 600
consensus_251#1 ACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCA-AGTCGGTGAACCAGTCTGC 401
* ** ** * *** * ** ** *** ** * * * * *** ** * **
consensus_251#0 GCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGT-AACGGATCGATCCGTTAAGTTCC 659
consensus_251#1 AATGC-GTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTC 460
* * ** *** * * * * * ** *** * * * * ** ** *
consensus_251#0 CAAGGTA-TCAGGCAAA-GCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCG 717
consensus_251#1 CTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGA 520
* * * ** * ** ** ** * * ** * * ** * *
consensus_251#0 GAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCG-ATT 776
consensus_251#1 GTAACGCTAGTAACGCTTCGG---CTAACCGTCAGACCAATTCGAG-CAGTAGCAGCATT 576
* * * * * ** * ** ** * ** *** * * **** * * ***
consensus_251#0 CCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGAT 836
consensus_251#1 TTATTGTACGTCAGATCG-GGCAGCAC--GATTTGTGAACCAATTTTTCCAAGCCGCTTG 633
* ** ** ** * ** **** *** * ** ** ** ****
consensus_251#0 CTGNGGTTGGGCACAATTCN--CCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTG 894
consensus_251#1 AAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG----------------- 676
* * ** * **** *** ** * * * * *
consensus_251#0 GACACCAACGNAGGGTNA 912
consensus_251#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||