cluster # 2510

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Anopheles gambiae
cluster # 2510 cluster # 2510 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2510#0 length = 685 sequences # 1

consensus_2510#1 length = 553 sequences # 1

consensusID : consensus_2510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CTGTGAATGCTCTTGGACACGTCTTCCGGTTGCTTTTCTTAGAACTGGAAACGTTTCGACCGTTTTTAAATCACTCTTTATCTTATCATCATCCGTACAACGATAAACAGAGCTGCACTTGAATACATGACCGACACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAACAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATCAAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAACCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTTCGTTATCTCAGTTCTCCTCAGCGAGCTTGGATTGCTCACCAGTAGCAGAAGATGACGTACGTTATTTCGCCACACTACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGCTTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGTGACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTAAACCTCTCACCAGCCGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACATGGCGGAGTCAGCTGATATTTCCGACA]

[+] EMBL BX625491             [CTGTGAATGCTCTTGGACACGTCTTCCGGTTGCTTTTCTTAGAACTGGAAACGTTTCGACCGTTTTTAAATCACTCTTTATCTTATCATCATCCGTACAACGATAAACAGAGCTGCACTTGAATACATGACCGACACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAACAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATCAAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAACCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTTCGTTATCTCAGTTCTCCTCAGCGAGCTTGGATTGCTCACCAGTAGCAGAAGATGACGTACGTTATTTCGCCACACTACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGCTTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGTGACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTAAACCTCTCACCAGCCGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACATGGCGGAGTCAGCTGATATTTCCGACA]




>consensus_2510#0
CTGTGAATGCTCTTGGACACGTCTTCCGGTTGCTTTTCTTAGAACTGGAAACGTTTCGAC
CGTTTTTAAATCACTCTTTATCTTATCATCATCCGTACAACGATAAACAGAGCTGCACTT
GAATACATGACCGACACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAA
CAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATC
AAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAA
CCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTTCGTTATCTCAGTTCTCC
TCAGCGAGCTTGGATTGCTCACCAGTAGCAGAAGATGACGTACGTTATTTCGCCACACTA
CTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGCT
TTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGTG
ACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTAAACCTCTCACCAGCC
GATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACATG
GCGGAGTCAGCTGATATTTCCGACA

consensusID : consensus_2510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [ATNGCCCCGAGGTTGAACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAACAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATCAAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAACCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTCGGTATCTCAGTTCTCCTCAGCGAGCTTGGATTGGTCACCAGTAGCANGAAGATGACGTACGTTATTTCGCCACACTACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGCTTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGTGACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTTAAACCTCTCANCAGCGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACATGGCGGAGGTGATG]

[+] EMBL AL930910             [ATNGCCCCGAGGTTGAACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAACAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATCAAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAACCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTCGGTATCTCAGTTCTCCTCAGCGAGCTTGGATTGGTCACCAGTAGCANGAAGATGACGTACGTTATTTCGCCACACTACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGCTTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGTGACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTTAAACCTCTCANCAGCGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACATGGCGGAGGTGATG]




>consensus_2510#1
ATNGCCCCGAGGTTGAACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAA
ACAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAAT
CAAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGA
ACCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTCGGTATCTCAGTTCTCC
TCAGCGAGCTTGGATTGGTCACCAGTAGCANGAAGATGACGTACGTTATTTCGCCACACT
ACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGC
TTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGT
GACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTTAAACCTCTCANCAG
CGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACAT
GGCGGAGGTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2510#0      CTGTGAATGCTCTTGGACACGTCTTCCGGTTGCTTTTCTTAGAACTGGAAACGTTTCGAC 60
consensus_2510#1      ------------------------------------------------------------
                                                                                  

consensus_2510#0      CGTTTTTAAATCACTCTTTATCTTATCATCATCCGTACAACGATAAACAGAGCTGCACTT 120
consensus_2510#1      ----------------------------------------------------------AT 2
                                                                                 *

consensus_2510#0      GAATACATGACCGACACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAA 180
consensus_2510#1      NGCCCCGAGGTTGA-ACACAAACGAAACATAGCTTTAAAGCTGCCATTCCGAAAAGTAAA 61
                           *  *   ** *********************************************

consensus_2510#0      CAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATC 240
consensus_2510#1      CAATGCGATAAAATGTTGGATTTAATCACCAACGAAGATTTAAACACTAATATTTCAATC 121
                      ************************************************************

consensus_2510#0      AAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAA 300
consensus_2510#1      AAGAACTCGCCTGGATCATTTGCTAGTTCTATCTCCACGCACTTCGGTTCAGATTCTGAA 181
                      ************************************************************

consensus_2510#0      CCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTTTCGTTATCTCAGTTCTCC 360
consensus_2510#1      CCAGTTACGCATGCAGACAGTTTCCGGAATAAGCGTTCTTTT-CGGTATCTCAGTTCTCC 240
                      ****************************************** ** **************

consensus_2510#0      TCAGCGAGCTTGGATTGCTCACCAGTAGCAG-AAGATGACGTACGTTATTTCGCCACACT 419
consensus_2510#1      TCAGCGAGCTTGGATTGGTCACCAGTAGCANGAAGATGACGTACGTTATTTCGCCACACT 300
                      ***************** ************  ****************************

consensus_2510#0      ACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGC 479
consensus_2510#1      ACTTGAGGGCGAAGAATTGAACTCACCTCGAACACCGATTCCGTTGAGACCTCTCGACGC 360
                      ************************************************************

consensus_2510#0      TTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGT 539
consensus_2510#1      TTTAAACAATGGCCTCTCGGCACATGCTTTATCGCCAGAAATGATCAGCATACGCAATGT 420
                      ************************************************************

consensus_2510#0      GACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATT-AAACCTCTCACCAG 598
consensus_2510#1      GACAAGGCTGGGAGGTGATCAATCGGAATTTAACACATTTAAATTTAAACCTCTCANCAG 480
                      ********************************************* ********** ***

consensus_2510#0      CCGATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACA 658
consensus_2510#1      C-GATGAATTAATAACCTCGTGGGCCGACGTAGAAATTACGGATGATGAGTCATCTGACA 539
                      * **********************************************************

consensus_2510#0      TGGCGGAGTCAGCTGATATTTCCGACA 685
consensus_2510#1      TGGCGGAGGTGATG------------- 553
                      ********