These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CCGAGGCTTNAAAATAGACGCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCACCGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTCCGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTATAANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC] [+] EMBL AL930967 [CCGAGGCTTNAAAATAGACGCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCACCGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTCCGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTATAANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC] consensusID : consensus_2514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGACGCGAAACGCAGTACGTGCCGGAATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCACCGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGCACCAACTC] [+] EMBL BM584445 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGACGCGAAACGCAGTACGTGCCGGAATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCACCGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGCACCAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2514#0 ----------------------------------------CCGAG-GCTTNAAAATAGAC 19 consensus_2514#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAC 60 ** * * ********* consensus_2514#0 GCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTA 79 consensus_2514#1 GCGAAACGCAGTACGTGCCGGA-ATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTA 119 ****************** ** ******* ***************************** consensus_2514#0 GCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTC 139 consensus_2514#1 GCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTC 179 ******************************** *************************** consensus_2514#0 GTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAA 199 consensus_2514#1 GTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAA 239 *********************** ************************************ consensus_2514#0 AACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAAC 259 consensus_2514#1 AACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAAC 299 ************************************************************ consensus_2514#0 TGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGAC 319 consensus_2514#1 TGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGAC 359 ************************************************************ consensus_2514#0 GTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCAC 379 consensus_2514#1 GTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCAC 419 ************************************************** ********* consensus_2514#0 CGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTAC 439 consensus_2514#1 CGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTAC 479 ******* **************************************************** consensus_2514#0 TACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTC 499 consensus_2514#1 TACGTGTGCACCAACTC------------------------------------------- 496 ******** ******** consensus_2514#0 CGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTAT 559 consensus_2514#1 ------------------------------------------------------------ consensus_2514#0 AANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC 605 consensus_2514#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||