These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TTTATGGTCAGAGGAGAGGCATGATGATTGGAGACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAATTCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAGGATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTACGATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATGTGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAACAGTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGCAAATAGT] [+] EMBL BX612320 [TTTATGGTCAGAGGAGAGGCATGATGATTGGAGACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAATTCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAGGATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTACGATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATGTGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAACAGTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGCAAATAGT] consensusID : consensus_2521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGAGACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAATTCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAGGATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACGATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAGTGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTAGCCAAAAAGGGA] [+] EMBL AL931065 [GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGAGACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAATTCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAGGATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACGATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAGTGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTAGCCAAAAAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2521#0 ---------------------------TTTATGGTCAGAGGAGAGGCATGA-TGATTGGA 32 consensus_2521#1 GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGA 60 *********************** *** **** consensus_2521#0 GACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAAT 92 consensus_2521#1 GACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAAT 120 ***** ************* ******************* ******************** consensus_2521#0 TCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAG 152 consensus_2521#1 TCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAG 180 **** *********************** *** ***** ***** * ************* consensus_2521#0 GGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAG 212 consensus_2521#1 GGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAG 240 ***************************** * ************* ********* **** consensus_2521#0 GATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTA------------CG 260 consensus_2521#1 GATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACG 300 ******* ******************* *** ***** * ***** ** consensus_2521#0 ATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATG 320 consensus_2521#1 ATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAG 360 ********** ***** * ******* * ******** ** *************** * * consensus_2521#0 TGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAA--CA 378 consensus_2521#1 TGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTA 420 ******* ************************************** ** ** *** * consensus_2521#0 GTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGC 438 consensus_2521#1 GCCAAAAAGGGA------------------------------------------------ 432 * ** * consensus_2521#0 AAATAGT 445 consensus_2521#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||