cluster # 2525

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Anopheles gambiae
cluster # 2525 cluster # 2525 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2525#0 length = 688 sequences # 1

consensus_2525#1 length = 550 sequences # 1

consensusID : consensus_2525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGAACAAAACTGGTAACGTCACCGAGTTTGGCGCAGGTAGACGAATTTTCGCTGAAATAATCCCAAAAATGACCGACGAATTGTGTGAAAAAATTGAAAATGACGAGTTTTACAAAAATTTCTTGGCCGATAAGCCAAGCCCGGAACTCCAGCTAACAGTGGCCATTAGCGACCAGATCGCCAAAACTCTCCGACGGTATCGAACAGCTGTCCAGCGCGCTGCAGAAACAGGTACGGGAGCAGTACGGTGCCCTGATATCGCAGGCCAAACATGCCGGTACGCTTAACGCATCGATTGAATCGATTACGAGCCACATCGAAACGCTCCAGTTCGGTGCGGAACGTTTGCGCCGGCAGATAACCGTGCCTTACGATCTGCTCGAAACGCAAACCAAAGTGCTCGGTCGGCTGCACGAGGCATCGCACGTGCTACGCCAGTGTGCCCGCTTCCTGCAGGTGCACAGGGAGCTGGACGGCACGAACGATCTGGCCGAGCAGGCCAGCATCGTGAACGAGCTGGAAGGGCTGATGGAAGATGTGGATCTTACCAAGATTGACTTTCTGCGCGACGAGATCGGCACCGTCAAGAAGGCCAAGCAGCGACTGCTTAAGGTAGCGAATCGGGATCTTTTCGAGGGCATACTGAAAAACAAACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTT]

[+] EMBL BM656463             [CCGAACAAAACTGGTAACGTCACCGAGTTTGGCGCAGGTAGACGAATTTTCGCTGAAATAATCCCAAAAATGACCGACGAATTGTGTGAAAAAATTGAAAATGACGAGTTTTACAAAAATTTCTTGGCCGATAAGCCAAGCCCGGAACTCCAGCTAACAGTGGCCATTAGCGACCAGATCGCCAAAACTCTCCGACGGTATCGAACAGCTGTCCAGCGCGCTGCAGAAACAGGTACGGGAGCAGTACGGTGCCCTGATATCGCAGGCCAAACATGCCGGTACGCTTAACGCATCGATTGAATCGATTACGAGCCACATCGAAACGCTCCAGTTCGGTGCGGAACGTTTGCGCCGGCAGATAACCGTGCCTTACGATCTGCTCGAAACGCAAACCAAAGTGCTCGGTCGGCTGCACGAGGCATCGCACGTGCTACGCCAGTGTGCCCGCTTCCTGCAGGTGCACAGGGAGCTGGACGGCACGAACGATCTGGCCGAGCAGGCCAGCATCGTGAACGAGCTGGAAGGGCTGATGGAAGATGTGGATCTTACCAAGATTGACTTTCTGCGCGACGAGATCGGCACCGTCAAGAAGGCCAAGCAGCGACTGCTTAAGGTAGCGAATCGGGATCTTTTCGAGGGCATACTGAAAAACAAACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTT]




>consensus_2525#0
CCGAACAAAACTGGTAACGTCACCGAGTTTGGCGCAGGTAGACGAATTTTCGCTGAAATA
ATCCCAAAAATGACCGACGAATTGTGTGAAAAAATTGAAAATGACGAGTTTTACAAAAAT
TTCTTGGCCGATAAGCCAAGCCCGGAACTCCAGCTAACAGTGGCCATTAGCGACCAGATC
GCCAAAACTCTCCGACGGTATCGAACAGCTGTCCAGCGCGCTGCAGAAACAGGTACGGGA
GCAGTACGGTGCCCTGATATCGCAGGCCAAACATGCCGGTACGCTTAACGCATCGATTGA
ATCGATTACGAGCCACATCGAAACGCTCCAGTTCGGTGCGGAACGTTTGCGCCGGCAGAT
AACCGTGCCTTACGATCTGCTCGAAACGCAAACCAAAGTGCTCGGTCGGCTGCACGAGGC
ATCGCACGTGCTACGCCAGTGTGCCCGCTTCCTGCAGGTGCACAGGGAGCTGGACGGCAC
GAACGATCTGGCCGAGCAGGCCAGCATCGTGAACGAGCTGGAAGGGCTGATGGAAGATGT
GGATCTTACCAAGATTGACTTTCTGCGCGACGAGATCGGCACCGTCAAGAAGGCCAAGCA
GCGACTGCTTAAGGTAGCGAATCGGGATCTTTTCGAGGGCATACTGAAAAACAAACCCGA
CCAGGTCGGTGTGTGCGTGCGCATCTTT

consensusID : consensus_2525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CCCCGAGGTTGATCACCAAGATTGACTTTCTGCGCGACGAGATCTGGCACCGTCAAGAAGGCCAAACAGCGGCTGCTGAAGGTAGCGAATCGTGATCTTTTCGAGGGGATTCTGAAAAACAAACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTTCACAATCTAAAGATACTGCCCAAATGCTTGAACAACGTGCTGGAAACGTTTGGCAGCTATCTGAAGGACGCTATCAAGGAATCGTTTGCCGGCACGGACGTCGCCAAGCTTCGCAAAACGGGTGTCTCGTCTCCGGCAAAGNGAACTGGGCCGAAGCACTGCCATCTGAAGTGCTGCCGGGCAAAGCTGCCAACCTGTACCAAATCGTCCAACTTCCGCACGAAGCTGTGGCAAGCGCTCGAATGGCTGTTCTTGGACGAAATGTACGGCACTGTACACAGGTACTGNTTCTGCAAAAGTGTACTGGTCGAGCTGCCGCTCGGCGATGACTACACGCTGGCGAAAGAGTTTGATCGCAAGTTTTGGAACAACCTGGAGAAACAGTTGTGAGCTC]

[+] EMBL AL931133             [CCCCGAGGTTGATCACCAAGATTGACTTTCTGCGCGACGAGATCTGGCACCGTCAAGAAGGCCAAACAGCGGCTGCTGAAGGTAGCGAATCGTGATCTTTTCGAGGGGATTCTGAAAAACAAACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTTCACAATCTAAAGATACTGCCCAAATGCTTGAACAACGTGCTGGAAACGTTTGGCAGCTATCTGAAGGACGCTATCAAGGAATCGTTTGCCGGCACGGACGTCGCCAAGCTTCGCAAAACGGGTGTCTCGTCTCCGGCAAAGNGAACTGGGCCGAAGCACTGCCATCTGAAGTGCTGCCGGGCAAAGCTGCCAACCTGTACCAAATCGTCCAACTTCCGCACGAAGCTGTGGCAAGCGCTCGAATGGCTGTTCTTGGACGAAATGTACGGCACTGTACACAGGTACTGNTTCTGCAAAAGTGTACTGGTCGAGCTGCCGCTCGGCGATGACTACACGCTGGCGAAAGAGTTTGATCGCAAGTTTTGGAACAACCTGGAGAAACAGTTGTGAGCTC]




>consensus_2525#1
CCCCGAGGTTGATCACCAAGATTGACTTTCTGCGCGACGAGATCTGGCACCGTCAAGAAG
GCCAAACAGCGGCTGCTGAAGGTAGCGAATCGTGATCTTTTCGAGGGGATTCTGAAAAAC
AAACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTTCACAATCTAAAGATACTGCCCAAA
TGCTTGAACAACGTGCTGGAAACGTTTGGCAGCTATCTGAAGGACGCTATCAAGGAATCG
TTTGCCGGCACGGACGTCGCCAAGCTTCGCAAAACGGGTGTCTCGTCTCCGGCAAAGNGA
ACTGGGCCGAAGCACTGCCATCTGAAGTGCTGCCGGGCAAAGCTGCCAACCTGTACCAAA
TCGTCCAACTTCCGCACGAAGCTGTGGCAAGCGCTCGAATGGCTGTTCTTGGACGAAATG
TACGGCACTGTACACAGGTACTGNTTCTGCAAAAGTGTACTGGTCGAGCTGCCGCTCGGC
GATGACTACACGCTGGCGAAAGAGTTTGATCGCAAGTTTTGGAACAACCTGGAGAAACAG
TTGTGAGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2525#0      CCGAACAAAACTGGTAACGTCACCGAGTTTGGCG--CAGGTAGACGAATTTTCGCTGAAA 58
consensus_2525#1      --CCCCGAGGTTGAT-----CACCAAGATTGACTTTCTGCGCGACGAGATCTGGC----- 48
                           * *   ** *     **** ** *** *   * *   *****  * * **     

consensus_2525#0      TAATCCCAAAAATGACCGACGAATTGTGTGAAAAAATTGAAAATGACGAGTTTTACAAAA 118
consensus_2525#1      --ACCGTCAAGAAGGCCAAACAGCGGCTGCTGAAGGTAGCGAATCGTGATCTTTTCGAGG 106
                        * *   ** * * ** *  *   *      **  * *  ***   **  *** * *  

consensus_2525#0      ATTTCTTGGCCGATAAGCCAAGCCCGGAACTCCAGCTAACAGTGGCCATTAGCGACCAGA 178
consensus_2525#1      GGATTCTGAAAAACAAACCCGACCAGG---TCGGTGTGTGCGTGCGCATCTTTCAC-AAT 162
                         *  **    * ** **   ** **   **    *    ***  ***     ** *  

consensus_2525#0      TCGCCAAAACTCTCCGACGGTATCGAACAGC-TGTCCAGCGCGCTGCAGAAACAGGTACG 237
consensus_2525#1      CTAAAGATACTGCCCAAATGC-TTGAACAACGTGCTGGAAACGTTT----GGCAGCTATC 217
                            * ***  ** *  *  * ***** * **       ** *       *** **  

consensus_2525#0      GGAGCAGTACGGTGCCCTGATATCGCAGGCCAA---ACATGCCGGTACGCTTAACGCATC 294
consensus_2525#1      TGA--AGGACGCTATCAAGGAATCGTTTGCCGGCACGGACGTCGCCAAGCTTCGCAAAAC 275
                       **  ** *** *  *  *  ****   ***       * * **  * ****  *  * *

consensus_2525#0      GATTGAATCGATTACGAGCCACATCGAAACGCTCCAGTTCGGTGCGGAACGTTTGCGCCG 354
consensus_2525#1      GGGTGTCTCGTCTCCGG--CAAAGNGAACTGGGCCGAAGCACTGCC-ATCTGAAGTGCTG 332
                      *  **  ***  * **   ** *  ***  *  **    *  ***  * *    * ** *

consensus_2525#0      GCAGATAACCGTGCCTTACGATCTGCTCGAAACGCAAACCAAAGTGCTCGGTCGGCTGCA 414
consensus_2525#1      CCGGGCAAAGCTGCC----AACCTGTACCAAAT--CGTCCAACTTCCGCACGAAGCTGTG 386
                       * *  **   ****     * ***  * ***      ****  * * *     ****  

consensus_2525#0      CGAGGCATCGCACGTGCTACGCCAGTGTGCCCGCTTCCTGCAG-GTGCACAGGGAGCTGG 473
consensus_2525#1      GCAAGCGCTCGAATGGCTGTTCTTGGACGAA-ATGTACGGCACTGTACACAGGTACTGNT 445
                        * **     *   ***   *  *   *      * * ***  ** ****** *     

consensus_2525#0      ACGGCACGAACGATCTGGCCGAGCAGGCCAGCATCGTGAACGAGCTGGAAGGGCTGATGG 533
consensus_2525#1      TCTGCAAAAGTGTACTGGTCGAGCTG--CCGC-TCGGCGATGACT---ACACGCTGGCGA 499
                       * ***  *  *  **** ***** *  * ** ***   * **     *   ****  * 

consensus_2525#0      AAGATGTGGATCTTACCAAGATTGACTTTCTGCGCGACGAGATCGGCACCGTCAAGAAGG 593
consensus_2525#1      AAGAGTTTGATCGCA---------AGTTTTGGAACAACCTGGA-GAAACAGTTGTGAGCT 549
                      ****  * ****  *         * ***  *  * **  *   *  ** **   **   

consensus_2525#0      CCAAGCAGCGACTGCTTAAGGTAGCGAATCGGGATCTTTTCGAGGGCATACTGAAAAACA 653
consensus_2525#1      C----------------------------------------------------------- 550
                      *                                                           

consensus_2525#0      AACCCGACCAGGTCGGTGTGTGCGTGCGCATCTTT 688
consensus_2525#1      -----------------------------------