cluster # 2527

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Anopheles gambiae
cluster # 2527 cluster # 2527 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2527#0 length = 706 sequences # 1

consensus_2527#1 length = 671 sequences # 1

consensusID : consensus_2527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCCCACGCGTCCGATCTATCACTTTTCACATGTTTCCATTATCTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGGACGAATCGCTTGACGATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTCCTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTTCGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTGCTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGATCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAACATTACAAC]

[+] EMBL BM594385             [CCGCCCACGCGTCCGATCTATCACTTTTCACATGTTTCCATTATCTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGGACGAATCGCTTGACGATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTCCTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTTCGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTGCTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGATCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAACATTACAAC]




>consensus_2527#0
CCGCCCACGCGTCCGATCTATCACTTTTCACATGTTTCCATTATCTTTTCTTTATTTGTT
TTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCG
GCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTA
ACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCA
GCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAAT
GAACTGTTCGAAAGCAACACGGCGGACGAATCGCTTGACGATTTGCTGGACGATGAAAGT
GGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTCCTCGCTGCCCGAAAAGCACTTC
CTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTTCGCGACTGCTGACCCACACCCA
TCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTGCTCGCGCTGGCAGATACAGTAT
CTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGATCGATGCTGCCAAAACGGCGAT
CGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGG
GACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAACATTACAAC

consensusID : consensus_2527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTGGGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGGATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATTTTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGATTTCACAGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCATTCCACTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATCGTACGTGAAAGGGCAACCGAAGTGGCACGTGCTGAAGGA]

[+] EMBL BM613617             [CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTGGGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGGATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATTTTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGATTTCACAGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCATTCCACTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATCGTACGTGAAAGGGCAACCGAAGTGGCACGTGCTGAAGGA]




>consensus_2527#1
CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTG
GGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGG
ATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCT
TTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACA
GATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTT
GTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGA
AGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGAC
CGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATT
TTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGATTTCACAGCGCCA
TTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCATTCCACTCGGAGA
GCGAGGAAGAGCTGCTGAATCTAATCCCCATCGTACGTGAAAGGGCAACCGAAGTGGCAC
GTGCTGAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2527#0      ------------------------------------------------------------
consensus_2527#1      CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTG 60
                                                                                  

consensus_2527#0      --------------CCGCCCA-CGCGTCCGATCTATCA-CTTTTCACATGTTTCCATTAT 44
consensus_2527#1      GGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGG 120
                                      ***** *  ** ** *  **** *  ***  **           

consensus_2527#0      CTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCT 104
consensus_2527#1      ATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCT 180
                       *       *   *    *  * *       *****************************

consensus_2527#0      TTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACA 164
consensus_2527#1      TTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACA 240
                      ********************** *************************************

consensus_2527#0      GATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTT 224
consensus_2527#1      GATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTT 300
                      ************************************************************

consensus_2527#0      GTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGA 284
consensus_2527#1      GTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGA 360
                      ************************************************************

consensus_2527#0      AGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCG-----GACGAATCGCTTGAC 339
consensus_2527#1      AGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGAC 420
                      ****************************************     ** * *    *****

consensus_2527#0      -GATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTC 398
consensus_2527#1      CGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATT 480
                       *   * * * **   ****           **  **     * **   *  *  ** * 

consensus_2527#0      CTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTT 458
consensus_2527#1      TTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGA-------TTTCAC 533
                       * ***  *    ** ** * *   *      * ** *    *** *       *     

consensus_2527#0      CGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTG 518
consensus_2527#1      AGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCAT-TCCA 592
                       *** *    *  *** *  **    * * ****   *  *      *  *     **  

consensus_2527#0      CTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGA 578
consensus_2527#1      CTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATC------------GTACGTGA 640
                      ****    *  **  * **   **   *  **     **             **  * **

consensus_2527#0      TCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAA 638
consensus_2527#1      AAGG-GCAACCGAAGTGGCACGTGCTGAAGGA---------------------------- 671
                        *  **  ** **  ***    **  * * *                            

consensus_2527#0      AACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAAC 698
consensus_2527#1      ------------------------------------------------------------
                                                                                  

consensus_2527#0      ATTACAAC 706
consensus_2527#1      --------