|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[ATCGCCCGAGGTNNATCAGACTACAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTGGACAAGTTCAATTCGATCGAAGATTTCCGTGTGCTGGAACCGCAGATCAACGAAATGCTTGAGGGTGTCGGTACTCTGAAACCGTGTCAAACGAAGCGCCGCCCGAGAAGCGTTTCGGAGAGCGAGGGTGTCGCGGTGGTGGTCGGTTCCGCACCGGGACCGTCGCATGCCGGTAGCCATGCTTACCAGGCCGGAGGAAGTCGCCGCGGCGGCAGCAGCGGAAGTGGAGCCGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCGATGCGATTCAACGGGAAACAGACCGGTGGAGGTATCGAACCGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGATGCGGCGCAGGAGCGGATCGGCAGGAAATCGTGTAGTGCGCACGTTTAACAACCCGAGCAGCAGCCATCGTTCCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTAGCAACA]
[+] EMBL AL932970 [ATCGCCCGAGGTNNATCAGACTACAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTGGACAAGTTCAATTCGATCGAAGATTTCCGTGTGCTGGAACCGCAGATCAACGAAATGCTTGAGGGTGTCGGTACTCTGAAACCGTGTCAAACGAAGCGCCGCCCGAGAAGCGTTTCGGAGAGCGAGGGTGTCGCGGTGGTGGTCGGTTCCGCACCGGGACCGTCGCATGCCGGTAGCCATGCTTACCAGGCCGGAGGAAGTCGCCGCGGCGGCAGCAGCGGAAGTGGAGCCGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCGATGCGATTCAACGGGAAACAGACCGGTGGAGGTATCGAACCGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGATGCGGCGCAGGAGCGGATCGGCAGGAAATCGTGTAGTGCGCACGTTTAACAACCCGAGCAGCAGCCATCGTTCCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTAGCAACA]
consensusID : consensus_2533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAACGAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTGAGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGGACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGCTGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCGGATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTTCCCTTGCCTTTCTTACCC]
[+] EMBL AL931223 [AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAACGAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTGAGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGGACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGCTGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCGGATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTTCCCTTGCCTTTCTTACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2533#0 ATCGCCCGAGGTNNATCAGACTAC-AAAATGGTCACTGTACGGGCTGGAGAAATTTTGGG 59
consensus_2533#1 --------AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGG 52
** * ** ** ***********************************
consensus_2533#0 CCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAAT 119
consensus_2533#1 CCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAAT 112
************************************************************
consensus_2533#0 ATTT-GGACAA-GTTCAATTCGATCGAAGATTTCC-GTGTGCTGGAACC-GCAGATCAAC 175
consensus_2533#1 ATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAAC 172
**** ****** *********************** ************* **********
consensus_2533#0 GAAATGCTTGAG-GGTGTCGGTACTCTGAAACC-GTGTCAAAC-GAAGC-GCCG--CCCG 229
consensus_2533#1 GAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTG 232
************ ******************** ********* ***** *** ** *
consensus_2533#0 AGAAGC-GTTTCGGAGAGC-GAGGGTGTCG--CGGTGGTGGTC-GGTTCC-GCACC-GGG 282
consensus_2533#1 AGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGG 292
****** ************ ********* ********** ****** ***** ***
consensus_2533#0 ACC-GTCGCATGCC-GGTA-GCCATGCTTACCAGGCCGGAGGAAGTCGCCGC------GG 333
consensus_2533#1 ACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGC 352
*** ********** **** ***************** * * * * * ** *
consensus_2533#0 CGGCAGCAG--CGGAAGTGGAG--CCGGTTCATCGAGTCACAGCAATACTGGTCATTACA 389
consensus_2533#1 TGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACA 412
******* ********* * **********************************
consensus_2533#0 CAAGTCGTAACC-GATGCGATTCAACGGGAAACAGACC-GGTGGAGGTATCGAACC-GGC 446
consensus_2533#1 CAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGC 472
************ ************************* ***************** ***
consensus_2533#0 TACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGA-TGCG-GCGCAG-GAGCG 503
consensus_2533#1 TACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCG 532
****************************************** **** ****** ** **
consensus_2533#0 GATCGGCAGGAAATCGTGTA-GTGCGCACGTT-TAACAACCCGAGCAGCAGCCA-TCGTT 560
consensus_2533#1 GATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTT 592
******************** *********** ********************* *****
consensus_2533#0 CCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTA 620
consensus_2533#1 CCCTTGCCTTTCTTACCC------------------------------------------ 610
******************
consensus_2533#0 GCAACA 626
consensus_2533#1 ------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||