cluster # 2542

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Anopheles gambiae
cluster # 2542 cluster # 2542 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2542#0 length = 670 sequences # 1

consensus_2542#1 length = 631 sequences # 1

consensusID : consensus_2542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGCGTGTATTTAGTGCTTCTTAGTGCTCCCGTGGTCCTTATTAAGGTTTTACATGAAACAATTTCTCCTACACACCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTTCATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCGCTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCAGTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGGCCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTACACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGGCTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGGAGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAAACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCAGTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGGCAAAGTCTAG]

[+] EMBL BM594179             [CCGCGTGTATTTAGTGCTTCTTAGTGCTCCCGTGGTCCTTATTAAGGTTTTACATGAAACAATTTCTCCTACACACCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTTCATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCGCTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCAGTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGGCCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTACACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGGCTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGGAGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAAACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCAGTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGGCAAAGTCTAG]




>consensus_2542#0
CCGCGTGTATTTAGTGCTTCTTAGTGCTCCCGTGGTCCTTATTAAGGTTTTACATGAAAC
AATTTCTCCTACACACCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTT
CATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCG
CTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCA
GTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGG
CCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTA
CACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGG
CTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGG
AGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAA
ACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCA
GTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGG
CAAAGTCTAG

consensusID : consensus_2542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CCGGAAAAGTGGAGTTTAGAGTTGTTATGAGCCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTTCATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCGCTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCAGTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGGCCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTACACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGGCTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGGAGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAAACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCAGTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGGCAAAGTCTAGCGCCG]

[+] EMBL BM636111             [CCGGAAAAGTGGAGTTTAGAGTTGTTATGAGCCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTTCATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCGCTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCAGTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGGCCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTACACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGGCTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGGAGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAAACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCAGTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGGCAAAGTCTAGCGCCG]




>consensus_2542#1
CCGGAAAAGTGGAGTTTAGAGTTGTTATGAGCCGTCGCTAGTGCTTGAGCAATGATGGAC
GTGGATCAGCCAGTTTCATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACA
GCACAGGAGCTTGTCGCTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTG
CCTGCCCTATTGATCAGTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAG
GAGGGGAAGAGCAAGGCCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGG
GACATTTCCGGCATTACACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAA
CATGATGACCGTGAGGCTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCA
TCACAGAAGCCGGCGGAGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGAC
CTTTCACTGGTCGAAAACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATT
AGCGAGGACCCGAGCAGTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCA
CCTCCGACGACGCCGGCAAAGTCTAGCGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2542#0      CCGCGTGTATTTAGTGCTTCTTAGTGCTCCCGTGGTCCTTATTAAGGTTTTACATGAAAC 60
consensus_2542#1      --------------------------------------CCGGAAAAGTGGAGTTTAGAGT 22
                                                                 ** **      *  *  

consensus_2542#0      AATTTCTCCTACACACCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTT 120
consensus_2542#1      TGTT------ATGAGCCGTCGCTAGTGCTTGAGCAATGATGGACGTGGATCAGCCAGTTT 76
                        **      *    *********************************************

consensus_2542#0      CATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCG 180
consensus_2542#1      CATCCACCAACGACAAGGAGCAGTCTGCACCGGATGCCGAAACAGCACAGGAGCTTGTCG 136
                      ************************************************************

consensus_2542#0      CTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCA 240
consensus_2542#1      CTGAAAAGTCACCCGGGGTTGTTGGGCGTGAAAACGATGATTTGCCTGCCCTATTGATCA 196
                      ************************************************************

consensus_2542#0      GTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGG 300
consensus_2542#1      GTGACAGTGATGAGGACGATCCACCGAAGGCACCGGCCGGAGAGGAGGGGAAGAGCAAGG 256
                      ************************************************************

consensus_2542#0      CCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTA 360
consensus_2542#1      CCAGCGATAATTCGGAGCCCGCGAAGCCGGATGTAGCCCCCGGGGACATTTCCGGCATTA 316
                      ************************************************************

consensus_2542#0      CACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGG 420
consensus_2542#1      CACCGATCGAAACGACGATTGTAAGCGTGGACGCTAAGGACAAACATGATGACCGTGAGG 376
                      ************************************************************

consensus_2542#0      CTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGG 480
consensus_2542#1      CTAAAAAAGAGCCAACAACAGTGGCTGAGACCGACGACCAAGCATCACAGAAGCCGGCGG 436
                      ************************************************************

consensus_2542#0      AGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAA 540
consensus_2542#1      AGCGGCAGGAAACGGCCTCCCTTTCGCCGCCAGATGACGAAGACCTTTCACTGGTCGAAA 496
                      ************************************************************

consensus_2542#0      ACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCA 600
consensus_2542#1      ACATTGATCTGACCGGTGTTTCCAGTGCGGAGGAATCGGGCATTAGCGAGGACCCGAGCA 556
                      ************************************************************

consensus_2542#0      GTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGG 660
consensus_2542#1      GTGAAAAGCCCGCCCAGAGGGTGAAGAAAGCAACAGTAACAGCACCTCCGACGACGCCGG 616
                      ************************************************************

consensus_2542#0      CAAAGTCTAG----- 670
consensus_2542#1      CAAAGTCTAGCGCCG 631
                      **********