cluster # 2545

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Anopheles gambiae
cluster # 2545 cluster # 2545 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2545#0 length = 820 sequences # 1

consensus_2545#1 length = 689 sequences # 1

consensusID : consensus_2545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 820
fasta sequence

                              [CAGAATCGCCCGAGGTGTTAAGAAAGCTTCGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTCGNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCGCTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAACCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCAGGGTAGACACTC]

[+] EMBL AL931328             [CAGAATCGCCCGAGGTGTTAAGAAAGCTTCGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTCGNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCGCTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAACCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCAGGGTAGACACTC]




>consensus_2545#0
CAGAATCGCCCGAGGTGTTAAGAAAGCTTCGGAGCGTAGNGTAGTGCTGACGGCAGGGAA
TCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAA
TCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTTGTGCG
ATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTG
CGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTC
GTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCG
TTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCA
TCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATA
ATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAACGCTATCGTTTCCTCTCA
GCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTTGGCCGTGTGTCCGATTAACGGGCAACG
CGCAATACTGGTCTGTTCTCAATGTCTCGNTCAGNATGTCGNACAATTTCGGGCTCNNCT
ATTTCACCTCTTCCTTCTNCTCNTCTCGCTNTCCCGATATGCGACTACAGATATCCCTAC
ACAGGACGGCACACGNTCCAGCCCGCAACCGACCCCAATATAGAGCTCCCCATAANAAAC
AAGGGAAATCGGCTAGGAAAACGAACCAGGGTAGACACTC

consensusID : consensus_2545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTTTCGGAGCGTAGGTAGTGCGACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAAGCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGTTGTTCTCAATGTTCTCGTCAGTTTGTCGTAGAATTTGGTTTTATTTTTCT]

[+] EMBL BX606567             [CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTTTCGGAGCGTAGGTAGTGCGACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAAGCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGTTGTTCTCAATGTTCTCGTCAGTTTGTCGTAGAATTTGGTTTTATTTTTCT]




>consensus_2545#1
CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTT
TCGGAGCGTAGGTAGTGCGACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTGAG
GAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTT
TAATTATTTACGAATGCATTTATTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTG
GCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGT
GCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGG
AATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTG
GACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAA
TGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAA
TGGCACCGAAAGCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTT
GGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGTTGTTCTCAATGTTCTCGTCAG
TTTGTCGTAGAATTTGGTTTTATTTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2545#0      -----------------------------CAGAATCGCCCGAG-GTGTTAA-GAAAGCTT 29
consensus_2545#1      CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTT 60
                                                       **     *   ******* ********

consensus_2545#0      -CGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTG 88
consensus_2545#1      TCGGAGCGTAGG-TAGTGC-GACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTG 118
                       **********  ****** ******* ********************************

consensus_2545#0      AGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTT 148
consensus_2545#1      AGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTT 178
                      ************************************************************

consensus_2545#0      TTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAAC 208
consensus_2545#1      TTTAATTATTTACGAATGCATTTATT-GTGCGATTTAGGAAGCGCCACCATAATTTAAAC 237
                      ************************** *********************************

consensus_2545#0      GTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGAT 268
consensus_2545#1      GTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGAT 297
                      ************************************************************

consensus_2545#0      GGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGA 328
consensus_2545#1      GGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGA 357
                      ************************************************************

consensus_2545#0      TGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCA 388
consensus_2545#1      TGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCA 417
                      ************************************************************

consensus_2545#0      CTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGC 448
consensus_2545#1      CTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGC 477
                      ************************************************************

consensus_2545#0      AAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGG 508
consensus_2545#1      AAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGG 537
                      ************************************************************

consensus_2545#0      GAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACG 568
consensus_2545#1      GAATGGCACCGAAA-GCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACG 596
                      ************** ********** **********************************

consensus_2545#0      TGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTC 628
consensus_2545#1      TGTT-GGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGT-TGTTCTCAATGTTCT 654
                      **** *******************************    **** ************   

consensus_2545#0      GNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCG 688
consensus_2545#1      CGTCAGTTTGTCGTAGAATTT--GGTTTTATTTTTCT----------------------- 689
                        ****  ***** * *****  ** *    * **                         

consensus_2545#0      CTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAA 748
consensus_2545#1      ------------------------------------------------------------
                                                                                  

consensus_2545#0      CCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCA 808
consensus_2545#1      ------------------------------------------------------------
                                                                                  

consensus_2545#0      GGGTAGACACTC 820
consensus_2545#1      ------------