These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACGATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAGCAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATTTTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAATTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGACAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA] [+] EMBL AL931426 [TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACGATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAGCAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATTTTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAATTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGACAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA] consensusID : consensus_2552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAGCAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTTTTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGCGGTTCACGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAATTTATAAGATCCGATAAAGATAACTTCGTTTAGCTTCTAGCACCACCTGACAATGACAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACAAAGGCTCTTAGCACGCGTAAGGCGCCACAGAAGTAATATGTCCTATCCCATGT] [+] EMBL BM578661 [CCGGCTACAACTCTCTAGCTGTAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAGCAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTTTTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGATGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGTTGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGCGGTTCACGATCATCGTCCTTCGAACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTCCAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTTAGTAAACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAATTTATAAGATCCGATAAAGATAACTTCGTTTAGCTTCTAGCACCACCTGACAATGACAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAATCATCTACAAAGGCTCTTAGCACGCGTAAGGCGCCACAGAAGTAATATGTCCTATCCCATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2552#0 TATCCCATGAATCCAGGAGCCCATCCCATGAATGGTGAATGATGTCGTTGGGCCGAAACG 60 consensus_2552#1 ------------------------------------------------------------ consensus_2552#0 ATAAGTTATTAGTCGCCGATCTCGCACCAGTAGTAGTGTTGCGCTACAACTCTCTAGCTG 120 consensus_2552#1 ---------------------------------------CCGGCTACAACTCTCTAGCTG 21 ****************** consensus_2552#0 TAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGTTTTGCAG 180 consensus_2552#1 TAACGCTCGTTTGTCAATGCTGTGGATTGCATATTGCAACAATGCAACAGTGCTTTGCAG 81 **************************************************** ******* consensus_2552#0 CAGGGAGAAAGGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGATT 240 consensus_2552#1 CAGGGTGGAATGATACTGCTGCTATTCTGTGTAATCTACCAGTGTTTGAGGCCAGCGTTT 141 ***** * ** ********************************************** ** consensus_2552#0 TTATTCTGACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGA 300 consensus_2552#1 TTATTCTAACAAACGGGCAATGTTAATTACCAAAACTTTAGTGATTTCGCTGACTTCAGA 201 ******* **************************************************** consensus_2552#0 TGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGT 360 consensus_2552#1 TGCATTTTTAAACATCTCTCGAAACGTTGGTTCCAAGTTCCTTCATGGTGTCGATTGTGT 261 ************************************************************ consensus_2552#0 TGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGGGCGGTTCGCGATCATCGTCCTTCGA 420 consensus_2552#1 TGCGTTGCCCTTCAGGTATTATCGTAAGGTGGGGG-CGGTTCACGATCATCGTCCTTCGA 320 *********************************** ****** ***************** consensus_2552#0 ACTTTGTTTGCGATCGTTCCCATG------------------------------GCAGTC 450 consensus_2552#1 ACTTTGTTTGCGATCGTTCCCATGTACTGTAGGTATGGAGAGGTATGGTGTTTAGCAGTC 380 ************************ ****** consensus_2552#0 CAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTNTAGTAA 510 consensus_2552#1 CAGTCACTGGTTGATACTACCAAGAGATCTTTGAAGTGAATTATCACTAGCTTT-AGTAA 439 ***************************************************** ***** consensus_2552#0 ACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAANTGGTATCGCTATAA 570 consensus_2552#1 ACTACGTTTCGCACACACGTATTACAGGGAGTTGATCCTTTTTAAATGGTATCGCTATAA 499 ********************************************* ************** consensus_2552#0 TTTNATAACGATCCGATAAAGATAACTTCGTTTAGGCTTCTAGACACCACCTGACAATGA 630 consensus_2552#1 TTTA-TAA-GATCCGATAAAGATAACTTCGTTTAG-CTTCTAG-CACCACCTGACAATGA 555 *** *** ************************** ******* **************** consensus_2552#0 CAGGTCCCTACAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAAT 690 consensus_2552#1 CAGCTCCTTGCAGCCTAGCAGCGAACTGCAGGGTTATAGATAGGTTGAAAACCCGTGAAT 615 *** *** * ************************************************** consensus_2552#0 CATCTACNAAAGGCTCTTAGACACGGCGTAAAGGCGCCACCAGA---------------- 734 consensus_2552#1 CATCTACAAA-GGCTCTTAG-CACG-CGTAA-GGCGCCACAGAAGTAATATGTCCTATCC 671 ******* ** ********* **** ***** ******** * consensus_2552#0 ----- consensus_2552#1 CATGT 676 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||