cluster # 2555

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Anopheles gambiae
cluster # 2555 cluster # 2555 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2555#0 length = 681 sequences # 1

consensus_2555#1 length = 667 sequences # 1

consensusID : consensus_2555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCGAGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCAGCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCAGCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCACTATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACTTGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCTTCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACATACTAAAAGCAACATCCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGG]

[+] EMBL BM600529             [CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCGAGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCAGCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCAGCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCACTATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACTTGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCTTCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACATACTAAAAGCAACATCCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGG]




>consensus_2555#0
CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCG
AGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCA
GCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCA
GCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCAC
TATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACT
TGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCT
TCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAA
CGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCG
AAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACA
CACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCA
GCAGCAGCAGCAAAAAGAAACATACTAAAAGCAACATCCGAAAGCGAATACTACTGCAGA
CACCTATACACAACCTACTGG

consensusID : consensus_2555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGGCGGCGGATAAGTGACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTCTTTCTTCCTCTTGCGCTAGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACACATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATACGGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACGTGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTAGGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC]

[+] EMBL BM593961             [CCGGCGGCGGATAAGTGACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTCTTTCTTCCTCTTGCGCTAGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACACATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATACGGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACGTGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTAGGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC]




>consensus_2555#1
CCGGCGGCGGATAAGTGACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTC
TCTCTTTCTTCCTCTTGCGCTAGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCT
AGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAG
ACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACA
CACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAAC
AACAACAGCAGCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAAT
ACTACTGCAGACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAA
CCGTCACACACATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCAC
AATCCAATACGGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACC
ACGCTCGACGTGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGC
ATCGGCGCTAGGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGC
AGCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2555#0      CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCG 60
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      AGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCA 120
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      GCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCA 180
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      GCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCAC 240
consensus_2555#1      ------------------------------------------------------------
                                                                                  

consensus_2555#0      TATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACT 300
consensus_2555#1      ---------------------------------------------CCGGCGGCGGATAAG 15
                                                                    *  *  * * **  

consensus_2555#0      TGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCT 360
consensus_2555#1      TG--ACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTC-TTTCTTCC 72
                      **   * * * *  *   *   *** * *     *  ** *  *   * *    *  ** 

consensus_2555#0      TCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAA 420
consensus_2555#1      TCTTGCGCT--AGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAA 130
                      **   *  *   ************************************************

consensus_2555#0      CGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCG 480
consensus_2555#1      CGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCG 190
                      ************************************************************

consensus_2555#0      AAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACA 540
consensus_2555#1      AAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACA 250
                      ********************************************** *************

consensus_2555#0      CACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCA 600
consensus_2555#1      CACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCA 310
                      ************************************************************

consensus_2555#0      GCAGCAGCAGCAAAAAGAAACA-TACTAAAAGCAACATCCGAAAGCGAATACTACTGCAG 659
consensus_2555#1      GCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAG 370
                      ********************** ************** **********************

consensus_2555#0      ACACCTATACACAACCTACTGG-------------------------------------- 681
consensus_2555#1      ACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACA 430
                      **********************                                      

consensus_2555#0      ------------------------------------------------------------
consensus_2555#1      CATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATAC 490
                                                                                  

consensus_2555#0      ------------------------------------------------------------
consensus_2555#1      GGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACG 550
                                                                                  

consensus_2555#0      ------------------------------------------------------------
consensus_2555#1      TGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTA 610
                                                                                  

consensus_2555#0      ---------------------------------------------------------
consensus_2555#1      GGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC 667