These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAGTGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATCGCGACTACACACGACCCTGTCCGCCTGTGTTGGTTGTTTCTGTTGTGTCGTTGTCTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCCATTTCCAATGCGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGTGTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACCAAGTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG] [+] EMBL BM615306 [CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAGTGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATCGCGACTACACACGACCCTGTCCGCCTGTGTTGGTTGTTTCTGTTGTGTCGTTGTCTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCCATTTCCAATGCGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGTGTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACCAAGTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG] consensusID : consensus_2558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCGCGATCGATTGCGGATGTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCGGTGTAAAGGGCACCTTGATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAGATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGCTGCGGCATTGCGCTGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAAGTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGAGGATGTATCCCACGAGCAGGTGTCACGAACGACGAGCGATACGCTGGGCC] [+] EMBL BM593840 [CCGCGATCGATTGCGGATGTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCGGTGTAAAGGGCACCTTGATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAGATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGCTGCGGCATTGCGCTGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAAGTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGAGGATGTATCCCACGAGCAGGTGTCACGAACGACGAGCGATACGCTGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2558#0 CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAG 60 consensus_2558#1 ------------------------------------------------------------ consensus_2558#0 TGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATC 120 consensus_2558#1 ------------------------------------------CCGCGATCGATTGCGGAT 18 ** *** * ** consensus_2558#0 GCGACTACACACG--ACCCTGTCCGCCT--GTGTTGGTTGT--TTCTGTTGTGTCGTTGT 174 consensus_2558#1 GTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCG 78 * * ** * **** *** * **** *** * * ** ** consensus_2558#0 CTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCC----ATTTCCAATG 230 consensus_2558#1 GTGTAAAGGGCACCTT--GATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAG 136 *** ** ** * ** * * * **** * ** * * * consensus_2558#0 CGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGT 290 consensus_2558#1 ATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGC-TGCGGCAT-TGCGC 194 * ** *** * ** * ** ** ** * * ** ** ** * * * consensus_2558#0 GTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACC----AA 346 consensus_2558#1 TGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAA 254 *** * * ** * * * * * ** * * ** * ** consensus_2558#0 GTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCC 406 consensus_2558#1 GTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCC 314 ************************ *********************************** consensus_2558#0 AGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGC 466 consensus_2558#1 AGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGC 374 ************************************************************ consensus_2558#0 GAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTC 526 consensus_2558#1 GAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTC 434 ************************************************************ consensus_2558#0 ATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAA 586 consensus_2558#1 ATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAA 494 ************************************************************ consensus_2558#0 GACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG---- 642 consensus_2558#1 GACTCCAGCTATGACAGTGATTGCGATGGGG-AGGATGTAT-CCCACGAGCAGGTGTCAC 552 ******************************* ********* ************** consensus_2558#0 ------------------------ consensus_2558#1 GAACGACGAGCGATACGCTGGGCC 576 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||