cluster # 257

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Anopheles gambiae
cluster # 257 cluster # 257 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_257#0 length = 702 sequences # 1

consensus_257#1 length = 588 sequences # 1

consensusID : consensus_257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [TTACGTTTCAAATCATCGGTTGCTTGGACCGACATTCGGCAAACAATTTGTGCAATATTTCAAATGGAATGCTACTGGTCGGAAACGATGCTTATAATGTTTGAGAGCTGGATATAGAGAAACCCTCCCAGAACACGTGTGTCTTACCCTTTATATGTCCCAATTTTGGTTACGTCTTAAGTAGTGAAAGAAACGCCATAACAACGTAAACAACGAGACGAGCTACGTGGCAGCTATACGCTATACTCTGTAGCAGACGGACTGCTCATTACTAGATCTGTTAGTTAGATTATGTAGTTGTTGTAGTCGCATTAGCTGTAAATTACTGCGGCTTGCTAACCAAGCCAACCAAATGAACACAAAACAAAGGTACCAATGTTTAGGCTGTAAGAGTCTCACAGTACATAATACCGTGTCCACCGGAACGATGAAATGTTCGGAACGATACGATTATCTGTCGAGTTTAGAGAAGCAGGAGAAAGCAATCACTAATGATAGAGAGAAGGCGAGCGAGTGAGAGCAAAGCTCTTTGCTTAGGTTATTTGCTTGTTAAGATATCTTGTTCGATGAGAGAACTGTTAGTGCTAGAGTAGGGAATGTTGTTGTACAAAAGCGTGGCGCAAGGGCGCCTATCGCCATATGACCCAAGTGACCATTACACCATCCTGTATGTATCCACTATATCCTAGCAATACATTTATT]

[+] EMBL BX612864             [TTACGTTTCAAATCATCGGTTGCTTGGACCGACATTCGGCAAACAATTTGTGCAATATTTCAAATGGAATGCTACTGGTCGGAAACGATGCTTATAATGTTTGAGAGCTGGATATAGAGAAACCCTCCCAGAACACGTGTGTCTTACCCTTTATATGTCCCAATTTTGGTTACGTCTTAAGTAGTGAAAGAAACGCCATAACAACGTAAACAACGAGACGAGCTACGTGGCAGCTATACGCTATACTCTGTAGCAGACGGACTGCTCATTACTAGATCTGTTAGTTAGATTATGTAGTTGTTGTAGTCGCATTAGCTGTAAATTACTGCGGCTTGCTAACCAAGCCAACCAAATGAACACAAAACAAAGGTACCAATGTTTAGGCTGTAAGAGTCTCACAGTACATAATACCGTGTCCACCGGAACGATGAAATGTTCGGAACGATACGATTATCTGTCGAGTTTAGAGAAGCAGGAGAAAGCAATCACTAATGATAGAGAGAAGGCGAGCGAGTGAGAGCAAAGCTCTTTGCTTAGGTTATTTGCTTGTTAAGATATCTTGTTCGATGAGAGAACTGTTAGTGCTAGAGTAGGGAATGTTGTTGTACAAAAGCGTGGCGCAAGGGCGCCTATCGCCATATGACCCAAGTGACCATTACACCATCCTGTATGTATCCACTATATCCTAGCAATACATTTATT]




>consensus_257#0
TTACGTTTCAAATCATCGGTTGCTTGGACCGACATTCGGCAAACAATTTGTGCAATATTT
CAAATGGAATGCTACTGGTCGGAAACGATGCTTATAATGTTTGAGAGCTGGATATAGAGA
AACCCTCCCAGAACACGTGTGTCTTACCCTTTATATGTCCCAATTTTGGTTACGTCTTAA
GTAGTGAAAGAAACGCCATAACAACGTAAACAACGAGACGAGCTACGTGGCAGCTATACG
CTATACTCTGTAGCAGACGGACTGCTCATTACTAGATCTGTTAGTTAGATTATGTAGTTG
TTGTAGTCGCATTAGCTGTAAATTACTGCGGCTTGCTAACCAAGCCAACCAAATGAACAC
AAAACAAAGGTACCAATGTTTAGGCTGTAAGAGTCTCACAGTACATAATACCGTGTCCAC
CGGAACGATGAAATGTTCGGAACGATACGATTATCTGTCGAGTTTAGAGAAGCAGGAGAA
AGCAATCACTAATGATAGAGAGAAGGCGAGCGAGTGAGAGCAAAGCTCTTTGCTTAGGTT
ATTTGCTTGTTAAGATATCTTGTTCGATGAGAGAACTGTTAGTGCTAGAGTAGGGAATGT
TGTTGTACAAAAGCGTGGCGCAAGGGCGCCTATCGCCATATGACCCAAGTGACCATTACA
CCATCCTGTATGTATCCACTATATCCTAGCAATACATTTATT

consensusID : consensus_257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [GAGGCCAAGAATCGGCACGNGNGCGGTGGTATTNGTCNTGTGTGCCTATGACACAGAGGAATTGGATCTCTCGACAGAAAAGCAACACCTTACATCTCTTACACCTTCTTGTCCCGATTGTACCTGCCGCGAATCAGTGCAAAAGCACACCTTATAATAGAAATGTTAGCATGGTGTAGTTAGCGGGGCGTAATGTCGGAAAAGAACTTTGTCCATTCATTGATCTTACGCCCATCTTCCCCAAGCAGCTGACCAGAGCAAAGCTTACAGGGTTTCTCTCACCAGTCTGCGCAACACTGCAAGCAGCTGTATCAAACTTGTCTATTACGTTTCAAATCATCGAGTTGCTTGGACCGACATTCGGCAAACAATGTGTGCAATATTGAAATGGAATGCTACTGGTCGGAAACGATGCTTAGAATGTNNCGGACGAGCTGGCTAGAGAGAGAGACCCTCCCATAACACGTGTGTCTTACCCGTTGATCACTGACCCAATTCNTGGCTAGCGTCTTACGGTAGGTGACACACGAAACGCCATAACAACGTAAACAACGAGAACGAGCTACGTGGCAGCTGTACGCTATACTC]

[+] EMBL BX467222             [GAGGCCAAGAATCGGCACGNGNGCGGTGGTATTNGTCNTGTGTGCCTATGACACAGAGGAATTGGATCTCTCGACAGAAAAGCAACACCTTACATCTCTTACACCTTCTTGTCCCGATTGTACCTGCCGCGAATCAGTGCAAAAGCACACCTTATAATAGAAATGTTAGCATGGTGTAGTTAGCGGGGCGTAATGTCGGAAAAGAACTTTGTCCATTCATTGATCTTACGCCCATCTTCCCCAAGCAGCTGACCAGAGCAAAGCTTACAGGGTTTCTCTCACCAGTCTGCGCAACACTGCAAGCAGCTGTATCAAACTTGTCTATTACGTTTCAAATCATCGAGTTGCTTGGACCGACATTCGGCAAACAATGTGTGCAATATTGAAATGGAATGCTACTGGTCGGAAACGATGCTTAGAATGTNNCGGACGAGCTGGCTAGAGAGAGAGACCCTCCCATAACACGTGTGTCTTACCCGTTGATCACTGACCCAATTCNTGGCTAGCGTCTTACGGTAGGTGACACACGAAACGCCATAACAACGTAAACAACGAGAACGAGCTACGTGGCAGCTGTACGCTATACTC]




>consensus_257#1
GAGGCCAAGAATCGGCACGNGNGCGGTGGTATTNGTCNTGTGTGCCTATGACACAGAGGA
ATTGGATCTCTCGACAGAAAAGCAACACCTTACATCTCTTACACCTTCTTGTCCCGATTG
TACCTGCCGCGAATCAGTGCAAAAGCACACCTTATAATAGAAATGTTAGCATGGTGTAGT
TAGCGGGGCGTAATGTCGGAAAAGAACTTTGTCCATTCATTGATCTTACGCCCATCTTCC
CCAAGCAGCTGACCAGAGCAAAGCTTACAGGGTTTCTCTCACCAGTCTGCGCAACACTGC
AAGCAGCTGTATCAAACTTGTCTATTACGTTTCAAATCATCGAGTTGCTTGGACCGACAT
TCGGCAAACAATGTGTGCAATATTGAAATGGAATGCTACTGGTCGGAAACGATGCTTAGA
ATGTNNCGGACGAGCTGGCTAGAGAGAGAGACCCTCCCATAACACGTGTGTCTTACCCGT
TGATCACTGACCCAATTCNTGGCTAGCGTCTTACGGTAGGTGACACACGAAACGCCATAA
CAACGTAAACAACGAGAACGAGCTACGTGGCAGCTGTACGCTATACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_257#0      TTACGTTTCAAATCATCGGTTGCTTGGACCGACATTCGGCAAACAATTTGTGCAATATTT 60
consensus_257#1      -------------------------------------------GAGGCCAAGAATCGGCA 17
                                                                 *      * *      

consensus_257#0      CAAATGGAATGCTACTGGTCGGAAACGATGCTTATAATGTTTGAGAGCTGGATATAGAGA 120
consensus_257#1      CGNGNGCGGTGGTATTNGTCNTGT---GTGCCTATGACACAGAGGAATTGGATCTCTCGA 74
                     *    *   ** ** * ***        *** *** *       **  ***** *   **

consensus_257#0      AACCCTCCCAGAACAC-GTGTGTCTTACCCTTTATATGTCCCAATTTTGGTTACGTCTTA 179
consensus_257#1      CAGAAAAGCAACACCTTACATCTCTTACACCTTCT-TGTCCCGATTGTACCTGC-CGCGA 132
                      *      **  **      * ****** * ** * ****** *** *   * *     *

consensus_257#0      AGTAGTGAAAGAAACGCCATAACAACGTAAACAACGAGACGAGCTACGTGGCAGCTATAC 239
consensus_257#1      ATCAGTGCAAAAGCACACCTTATAATAGAAATGTTAGCATGGTGTA---GTTAGCGGGGC 189
                     *  **** ** *     * * * **   ***       * *   **   *  ***    *

consensus_257#0      GCTATACTCTGTAGCAGACGGACTGCTCATTACTAGATCTGTTAGTTAGATTATGTAGTT 299
consensus_257#1      GTAATG-TCGGAAAAGAAC--TTTGTCCATTCATTGATCTTACGCCCATCTTCCCCAA-- 244
                     *  **  ** * *    **    **  ****  * *****       *  **    *   

consensus_257#0      GTTGTAGTCGCATTAGCTGTAAATTACTGCGGCTTGCTAACCAAGCCAACCAAATGAACA 359
consensus_257#1      ---GCAGCTGACCAGAGCAAAGCTTACAGGGTTTCTCTCACCAGTCTGCGCAAC---ACT 298
                        * **  *          *  **** * *  *  ** ****  *    ***    ** 

consensus_257#0      CAAAACAAAGGTACCAATGTTTAGGCTGTAAGAGTCTCACAGTACATAATACCGTGTCCA 419
consensus_257#1      GCAAGCAGCTGTATCAAACTT----------GTCTATTACGTTTCAAATCATCGAGTTGC 348
                       ** **   *** ***  **          *  * * **  * ** *  * ** **   

consensus_257#0      CCGGAACGATGAAATGTTCGGAACGATACGATTATCTGTCGAGTTTAGAGAAGCAGGA-G 478
consensus_257#1      TTGGACCGAC---ATTCGGCAAACAATGTGTGCAATATTGAAATGGAATGCTACTGGTCG 405
                       *** ***    **      *** **  *   *    *  * *  *  *   * **  *

consensus_257#0      AAAGCAATCACTAATGATAGAGAGAAGGCGAGCGAGTGAGAGCAAAGCTCTTTGCTTAGG 538
consensus_257#1      GAAACGAT-GCTTAGAATGTNNCGGA--CGAGCTGGCTAGAGAGAGAGACCCT-CCCATA 461
                      ** * **  ** *  **     * *  *****  *  ****  *    *  * *  *  

consensus_257#0      TTATTTGCTTGTTAAGATATCTTGTTCGATGAGAGAACTGTTAGTGCTAGAGTAGGGAAT 598
consensus_257#1      ACACGTGTGTCTTA---CCCGTTGATCACTGACCCAATTCNTGG--CTAG---------- 506
                       *  **  * ***       *** **  ***   ** *  * *  ****          

consensus_257#0      GTTGTTGTACAAAAGCGTGGCGCAAGGGCGCCTATCGCCATATGACCCAAGTGACCATTA 658
consensus_257#1      --CGTCTTACGGTAG-GTGACACACGAAACGCCATAACAACGTAAACAACGAGAACG--- 560
                        **  ***   ** *** * ** *     * **  * *  * * * * * ** *    

consensus_257#0      CACCATCCTGTATGTATCCACTATATCCTAGCAATACATTTATT 702
consensus_257#1      AGCTACGTGGCAGCTGTACGCTATACTC---------------- 588
                       * *    * *  * * * *****  *