cluster # 2572

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Anopheles gambiae
cluster # 2572 cluster # 2572 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2572#0 length = 410 sequences # 1

consensus_2572#1 length = 385 sequences # 1

consensusID : consensus_2572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CCCAGGGANTTNGCGGGCTGCCCATCATGCTCGCCGGCAAGGCATACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATATGGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGCTGCCGCCCTATCTCTGCCCGTTAACCTGGTTGGGCTGATCCCGCTGTGCGAGAACATGCCCTCGGGAATGGCCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTGGCGGTGCACGACACCAACAATGCCGGCCGGCTGATGCTAGCCGACGCGTTCGTGTACGGGCAGACCACTTTCAAGCCGAAAATTGTCGTCGACGTGGCCACGCTCTCGGACGGCATTGTGCATGCGCTCGGTGGTGCTGCTAG]

[+] EMBL AL933283             [CCCAGGGANTTNGCGGGCTGCCCATCATGCTCGCCGGCAAGGCATACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATATGGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGCTGCCGCCCTATCTCTGCCCGTTAACCTGGTTGGGCTGATCCCGCTGTGCGAGAACATGCCCTCGGGAATGGCCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTGGCGGTGCACGACACCAACAATGCCGGCCGGCTGATGCTAGCCGACGCGTTCGTGTACGGGCAGACCACTTTCAAGCCGAAAATTGTCGTCGACGTGGCCACGCTCTCGGACGGCATTGTGCATGCGCTCGGTGGTGCTGCTAG]




>consensus_2572#0
CCCAGGGANTTNGCGGGCTGCCCATCATGCTCGCCGGCAAGGCATACGTTCAACAGTGGC
GGACTGTGTCTAAAGAACCCGGAAGATATGGCCAAGTATCGGGCGAGCATTGCCGGCGCT
GCGACGGTGGTAGCGACGATTCGGGCAGCTGCCGCCCTATCTCTGCCCGTTAACCTGGTT
GGGCTGATCCCGCTGTGCGAGAACATGCCCTCGGGAATGGCCTTCAAGCCGGGCGACGTG
ATTACGGCAATGAACGGGAAGACGGTGGCGGTGCACGACACCAACAATGCCGGCCGGCTG
ATGCTAGCCGACGCGTTCGTGTACGGGCAGACCACTTTCAAGCCGAAAATTGTCGTCGAC
GTGGCCACGCTCTCGGACGGCATTGTGCATGCGCTCGGTGGTGCTGCTAG

consensusID : consensus_2572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [ACCAGCTTGCGGATGGAAAAGCATGTCTGCTTCTGTCGTCGCCCGGAGCTCGTGCGAGCCGCCGATCTTCCTCGAGATCAGCTACTGTGGCGATGACAAGGCGGGCCGCCCCATCATGCTCGCCGGCAAGGGCATGACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATATGGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGGCTGCCGCCCTATCTCTGCCCGTTAACCTGGGTTGGGCTGATCCCGCTGTGCGAGAACATGCCCTCGGGAATGGGCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTGGCGGTGCACGAAACCAAAAAATGCC]

[+] EMBL AL934577             [ACCAGCTTGCGGATGGAAAAGCATGTCTGCTTCTGTCGTCGCCCGGAGCTCGTGCGAGCCGCCGATCTTCCTCGAGATCAGCTACTGTGGCGATGACAAGGCGGGCCGCCCCATCATGCTCGCCGGCAAGGGCATGACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATATGGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGGCTGCCGCCCTATCTCTGCCCGTTAACCTGGGTTGGGCTGATCCCGCTGTGCGAGAACATGCCCTCGGGAATGGGCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTGGCGGTGCACGAAACCAAAAAATGCC]




>consensus_2572#1
ACCAGCTTGCGGATGGAAAAGCATGTCTGCTTCTGTCGTCGCCCGGAGCTCGTGCGAGCC
GCCGATCTTCCTCGAGATCAGCTACTGTGGCGATGACAAGGCGGGCCGCCCCATCATGCT
CGCCGGCAAGGGCATGACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATAT
GGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGG
CTGCCGCCCTATCTCTGCCCGTTAACCTGGGTTGGGCTGATCCCGCTGTGCGAGAACATG
CCCTCGGGAATGGGCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTG
GCGGTGCACGAAACCAAAAAATGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2572#0      ------------------------------------------------------------
consensus_2572#1      ACCAGCTTGCGGATGGAAAAGCATGTCTGCTTCTGTCGTCGCCCGGAGCTCGTGCGAGCC 60
                                                                                  

consensus_2572#0      ----------------------------CCCAGGGANTTNGCGGGCTGCCC-ATCATGCT 31
consensus_2572#1      GCCGATCTTCCTCGAGATCAGCTACTGTGGCGATGACAAGGCGGGCCGCCCCATCATGCT 120
                                                    *   **    ****** **** ********

consensus_2572#0      CGCCGGCAAGG-CAT-ACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATAT 89
consensus_2572#1      CGCCGGCAAGGGCATGACGTTCAACAGTGGCGGACTGTGTCTAAAGAACCCGGAAGATAT 180
                      *********** *** ********************************************

consensus_2572#0      GGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAG- 148
consensus_2572#1      GGCCAAGTATCGGGCGAGCATTGCCGGCGCTGCGACGGTGGTAGCGACGATTCGGGCAGG 240
                      *********************************************************** 

consensus_2572#0      CTGCCGCCCTATCTCTGCCCGTTAACCTGG-TTGGGCTGATCCCGCTGTGCGAGAACATG 207
consensus_2572#1      CTGCCGCCCTATCTCTGCCCGTTAACCTGGGTTGGGCTGATCCCGCTGTGCGAGAACATG 300
                      ****************************** *****************************

consensus_2572#0      CCCTCGGGAATGGCCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTG 267
consensus_2572#1      CCCTCGGGAATGGGCTTCAAGCCGGGCGACGTGATTACGGCAATGAACGGGAAGACGGTG 360
                      ************* **********************************************

consensus_2572#0      GCGGTGCACGACACCAACAA-TGCCGGCCGGCTGATGCTAGCCGACGCGTTCGTGTACGG 326
consensus_2572#1      GCGGTGCACGAAACCAAAAAATGCC----------------------------------- 385
                      *********** ***** ** ****                                   

consensus_2572#0      GCAGACCACTTTCAAGCCGAAAATTGTCGTCGACGTGGCCACGCTCTCGGACGGCATTGT 386
consensus_2572#1      ------------------------------------------------------------
                                                                                  

consensus_2572#0      GCATGCGCTCGGTGGTGCTGCTAG 410
consensus_2572#1      ------------------------