cluster # 2573

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Anopheles gambiae
cluster # 2573 cluster # 2573 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2573#0 length = 508 sequences # 1

consensus_2573#1 length = 251 sequences # 1

consensusID : consensus_2573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TCGGCCCAGAAACTCTCACTGAAAGACGCCAAGTGATCGTGTGTGGTGATAAACTGTGTGATTTTTTAGTCATGGAGCGCTTTCTACTACTGTTGCTGTTCGTGGCGATCGTGCTCGGTGAAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCAGCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGCCCGACGGCCGAAGCTGAAAGACAACCTTCCCGATGCGCTGATGAGCGATTGCGTGAAATGCTCCGAAAAGCAACGGATCGGTTCGGACAAGGTGATCAACGTTCATCGTCGCCAACCGGCCGGACGATTTCGCGATCCTCGAGCAGCTGTACGATCCGACCGGCGAGTACCGGCGGAAGTACATGCCAGTCGGACGCACTGGCCGAGCACGGTGAACGCACGGAAAGGACCCGCGGACCTTACTCCGGTTCCGCACCCCCGGGCCGCA]

[+] EMBL AL934568             [TCGGCCCAGAAACTCTCACTGAAAGACGCCAAGTGATCGTGTGTGGTGATAAACTGTGTGATTTTTTAGTCATGGAGCGCTTTCTACTACTGTTGCTGTTCGTGGCGATCGTGCTCGGTGAAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCAGCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGCCCGACGGCCGAAGCTGAAAGACAACCTTCCCGATGCGCTGATGAGCGATTGCGTGAAATGCTCCGAAAAGCAACGGATCGGTTCGGACAAGGTGATCAACGTTCATCGTCGCCAACCGGCCGGACGATTTCGCGATCCTCGAGCAGCTGTACGATCCGACCGGCGAGTACCGGCGGAAGTACATGCCAGTCGGACGCACTGGCCGAGCACGGTGAACGCACGGAAAGGACCCGCGGACCTTACTCCGGTTCCGCACCCCCGGGCCGCA]




>consensus_2573#0
TCGGCCCAGAAACTCTCACTGAAAGACGCCAAGTGATCGTGTGTGGTGATAAACTGTGTG
ATTTTTTAGTCATGGAGCGCTTTCTACTACTGTTGCTGTTCGTGGCGATCGTGCTCGGTG
AAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCA
GCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGC
CCGACGGCCGAAGCTGAAAGACAACCTTCCCGATGCGCTGATGAGCGATTGCGTGAAATG
CTCCGAAAAGCAACGGATCGGTTCGGACAAGGTGATCAACGTTCATCGTCGCCAACCGGC
CGGACGATTTCGCGATCCTCGAGCAGCTGTACGATCCGACCGGCGAGTACCGGCGGAAGT
ACATGCCAGTCGGACGCACTGGCCGAGCACGGTGAACGCACGGAAAGGACCCGCGGACCT
TACTCCGGTTCCGCACCCCCGGGCCGCA

consensusID : consensus_2573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [GTTTTTAGTAATGGAGCGCTTTCTACTACTGTTGTTGTTCGTGGCGATCGTGCTCGGTGAAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCAGCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGCCCGACGGCCGAGAGCTGAAAGGTAGGTTGGTGTGGGCGTGAAAGGCTTGCCTCGCGCTCGTGCTCGACCCGG]

[-] EMBL BM639912             [GTTTTTAGTAATGGAGCGCTTTCTACTACTGTTGTTGTTCGTGGCGATCGTGCTCGGTGAAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCAGCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGCCCGACGGCCGAGAGCTGAAAGGTAGGTTGGTGTGGGCGTGAAAGGCTTGCCTCGCGCTCGTGCTCGACCCGG]




>consensus_2573#1
GTTTTTAGTAATGGAGCGCTTTCTACTACTGTTGTTGTTCGTGGCGATCGTGCTCGGTGA
AACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCAG
CAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGCC
CGACGGCCGAGAGCTGAAAGGTAGGTTGGTGTGGGCGTGAAAGGCTTGCCTCGCGCTCGT
GCTCGACCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2573#0      TCGGCCCAGAAACTCTCACTGAAAGACGCCAAGTGATCGTGTGTGGTGATAAACTGTGTG 60
consensus_2573#1      ------------------------------------------------------------
                                                                                  

consensus_2573#0      ATTTTTTAGTCATGGAGCGCTTTCTACTACTGTTGCTGTTCGTGGCGATCGTGCTCGGTG 120
consensus_2573#1      -GTTTTTAGTAATGGAGCGCTTTCTACTACTGTTGTTGTTCGTGGCGATCGTGCTCGGTG 59
                        ******** ************************ ************************

consensus_2573#0      AAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCA 180
consensus_2573#1      AAACAGCGAACGAAACCTACGTCACCAAGTACGATAACATCGATCTGGAGGAAATTTTCA 119
                      ************************************************************

consensus_2573#0      GCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGC 240
consensus_2573#1      GCAGCAAACGTTTGATGGACAACTACATGAACTGTCTGAAAAACGTTGGTCCTTGTACGC 179
                      ************************************************************

consensus_2573#0      CCGACGGCCGA-AGCTGAAAGACAACCTTCCCGATGCGCTGATGAGCGATTGCGTGAAAT 299
consensus_2573#1      CCGACGGCCGAGAGCTGAAAGGTAG------------GTTGGTGTGGGCGTGAAAGGCTT 227
                      *********** *********  *             * ** ** * *  **   *   *

consensus_2573#0      GCTCCGAAAAGCAACGGATCGGTTCGGACAAGGTGATCAACGTTCATCGTCGCCAACCGG 359
consensus_2573#1      GCCTCGC---GCTCGTGCTCGACCCGG--------------------------------- 251
                      **  **    **    * ***   ***                                 

consensus_2573#0      CCGGACGATTTCGCGATCCTCGAGCAGCTGTACGATCCGACCGGCGAGTACCGGCGGAAG 419
consensus_2573#1      ------------------------------------------------------------
                                                                                  

consensus_2573#0      TACATGCCAGTCGGACGCACTGGCCGAGCACGGTGAACGCACGGAAAGGACCCGCGGACC 479
consensus_2573#1      ------------------------------------------------------------
                                                                                  

consensus_2573#0      TTACTCCGGTTCCGCACCCCCGGGCCGCA 508
consensus_2573#1      -----------------------------