These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCCTTACTAGAGATTGGCAAACAAACAGTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGACTCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTACCCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACACATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGATGGCTTACC] [+] EMBL BM647543 [CCGCCTTACTAGAGATTGGCAAACAAACAGTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGACTCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTACCCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACACATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGATGGCTTACC] consensusID : consensus_2583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGACTCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTACCCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTACATGTAAC] [+] EMBL BM637249 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAGAAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCTTCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGTGAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGCACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCTCGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTGTTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGACTCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTACCCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTCATTACATGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2583#0 ----------------------------------------CCGCCTTACTAGAGATTGGC 20 consensus_2583#1 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60 ** * * * * consensus_2583#0 AAACAAACA-GTTAGTGCAAAGGTAGTAGTTAGCGGTGGTATCTTTAACACGATCGCTAG 79 consensus_2583#1 CCGCCCACGCGTCCGTGCAGAGGTAGTAGTTAGCGGTGGTATCTATAACACGATCGCTAG 120 * ** ** ***** ************************ *************** consensus_2583#0 AAAGGAACGACCGCAATCACCCCGGTAGCAACAACAA--AAAAGTCCAAACTTCCAAGCT 137 consensus_2583#1 AAAGGAACGACCGCAATCACCCCGGTAGCAACAACAACAAAAAGTCCAAACTTCCAAGCT 180 ************************************* ********************* consensus_2583#0 TCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGT 197 consensus_2583#1 TCATCTAGAATGCACAAGGCCGGATGAAGGTGTACGCATCCGCCATGAGGATGTTGTGGT 240 ************************************************************ consensus_2583#0 GAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGC 257 consensus_2583#1 GAAGTGCATCCGGCGGTAGTGTGCGCACTACCGGACACTACTGGCGCACACGTGCGGGGC 300 ************************************************************ consensus_2583#0 ACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCT 317 consensus_2583#1 ACGATTATAGGTGATTATGAAGACGATCGTACATGACCTTACGCAGGTTGTTGTGGCGCT 360 ************************************************************ consensus_2583#0 CGTTAAGTGACTAGTTGCGGAAGGCTTTCTATTTCCTCGCTCGATCGAGTAGCGTAACTG 377 consensus_2583#1 CGTTAAATGACTAGTTGCGGAAGGCTTTCTATTTCCCCGCTCGATCGAGTAGCGTAACTG 420 ****** ***************************** *********************** consensus_2583#0 TTTCTATTACGATTCTTATAGACGTTCTAATTGGATTACTGTTCAGACGTCATATAGGAC 437 consensus_2583#1 TTTCTATTACGATTCTTATAAACGTTCCAATTGCATTACTGTTCAGACGTCATAAACGAC 480 ******************** ****** ***** ******************** * *** consensus_2583#0 TCAATTATTCCTATTAGAAGCGTATTAAATAGCAGAAAAGAAGATTGGATTAGCTCCTAC 497 consensus_2583#1 TCAATTATTCCTATTAGAATCGTATTAAATAGCAGAAAAGATGATTGGATTAGCTCCTAC 540 ******************* ********************* ****************** consensus_2583#0 CCAACCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTC 557 consensus_2583#1 CCAATCAAATCACGATCGTACAATGTTATTAAATTGATCTTCTAGCACGTCTTATCACTC 600 **** ******************************************************* consensus_2583#0 ATTAGATGTAGCAACCGTAACGAATAATTGCTTCTGTAACCATGCACACACCTTCCCACA 617 consensus_2583#1 ATTACATGTAAC------------------------------------------------ 612 **** ***** * consensus_2583#0 CATACGGCTACTAACCACTGGCGATTTAATTATTCACAGCAATCACCACCACTCAGCGAT 677 consensus_2583#1 ------------------------------------------------------------ consensus_2583#0 GGCTTACC 685 consensus_2583#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||