These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CTGCCGCCAGCTTGCCGAGGTGGCGGCCAACTTTGTCCACAGCAACTTTCCGAAGGTCGCCCTCGAGGACGAACTGCTCGACATTCCGCACACGCTGCTGGTGAAGGTGATCGCCTCCGAGGCGCTGCGGGTCGACAGCGAGTATCAGGTGTTTAATGCCGCGCTGCGCTGGATCCGACACGATGTGGTGCCGCGCCGCCAGTACGTGTTTGAAATTTTGTCCCACGTGCGCATCGCTCTAGTGCCGGTAGGGCTAATCGATCAGGCCATCGCCGAGTGCCGGGATGTGTCGCTCAAGATAGCGCTCCGCTCGGTGCGCAAGGATCTGACATCGCGCCGCGGTCAGCTCGTGCCGTTGCGCGTGTGCCCGCGAGTTTGTGCGAAGAAGAGCATCTACGTGATTGGCGGATCGCGGCGAGAACGGTCGACCGGATGGACGCCAACGGATTGGATCTTTGAGTCCGTCATCAAGTATGACATCTTTCGGCACGAGTGGATCGAATCGGCCCCGATGGAGATCGGCCGCATACTGCCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGGCGAGCGCGGCAGCCAGATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACTGGGAACCGATGGCACCGATG] [+] EMBL BX620171 [CTGCCGCCAGCTTGCCGAGGTGGCGGCCAACTTTGTCCACAGCAACTTTCCGAAGGTCGCCCTCGAGGACGAACTGCTCGACATTCCGCACACGCTGCTGGTGAAGGTGATCGCCTCCGAGGCGCTGCGGGTCGACAGCGAGTATCAGGTGTTTAATGCCGCGCTGCGCTGGATCCGACACGATGTGGTGCCGCGCCGCCAGTACGTGTTTGAAATTTTGTCCCACGTGCGCATCGCTCTAGTGCCGGTAGGGCTAATCGATCAGGCCATCGCCGAGTGCCGGGATGTGTCGCTCAAGATAGCGCTCCGCTCGGTGCGCAAGGATCTGACATCGCGCCGCGGTCAGCTCGTGCCGTTGCGCGTGTGCCCGCGAGTTTGTGCGAAGAAGAGCATCTACGTGATTGGCGGATCGCGGCGAGAACGGTCGACCGGATGGACGCCAACGGATTGGATCTTTGAGTCCGTCATCAAGTATGACATCTTTCGGCACGAGTGGATCGAATCGGCCCCGATGGAGATCGGCCGCATACTGCCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGGCGAGCGCGGCAGCCAGATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACTGGGAACCGATGGCACCGATG] consensusID : consensus_2584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGAGTGGATCGAATCGGCCCCGATGGAGATCGGCCGCATCCTGCCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGGCGAGCGCGGCAGCCAGATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACTGGGAACCGATGGCACCGATGAATGTGCCCCGGTGCGAGTTTGGGCTCTGTACGCTCGGCGGCACGCTGTACGCGATGGGCGGCTGGATCGGGGAGGACATTGGCGGCTCGATTGAGTGTTACGATCCGATGAAAAATGCGTGGCGAATGGTAGGCGATCTGCCGGAACCCAAGTTCAGTATGGGTGTCGTAAGCTTCGAAGGCTTGATATACATTGTCGGTGGCTGCAATACTCACTCGAGATATCTAACCGATCTGATCAGCTACAATCCCGTTACGCATGAATGGACGAAGCTCGCCCGAATGCAAACCGCTCGCTGCCAGATGGGGGTAGCCATTCTCGACCGCCATCTGTACGTGGTCGGTGGCAACAGCAGCCCAGCAGGAAGTGCTACGCACAGTCGAACGCTACAGCTTCGACGAGGACAAGTGGTCAATGGTTTCGC] [+] EMBL BM576992 [CCGCGGACGCGTGGGCGGACGCGTGGGCGAGTGGATCGAATCGGCCCCGATGGAGATCGGCCGCATCCTGCCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGGCGAGCGCGGCAGCCAGATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACTGGGAACCGATGGCACCGATGAATGTGCCCCGGTGCGAGTTTGGGCTCTGTACGCTCGGCGGCACGCTGTACGCGATGGGCGGCTGGATCGGGGAGGACATTGGCGGCTCGATTGAGTGTTACGATCCGATGAAAAATGCGTGGCGAATGGTAGGCGATCTGCCGGAACCCAAGTTCAGTATGGGTGTCGTAAGCTTCGAAGGCTTGATATACATTGTCGGTGGCTGCAATACTCACTCGAGATATCTAACCGATCTGATCAGCTACAATCCCGTTACGCATGAATGGACGAAGCTCGCCCGAATGCAAACCGCTCGCTGCCAGATGGGGGTAGCCATTCTCGACCGCCATCTGTACGTGGTCGGTGGCAACAGCAGCCCAGCAGGAAGTGCTACGCACAGTCGAACGCTACAGCTTCGACGAGGACAAGTGGTCAATGGTTTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2584#0 CTGCCGCCAGCTTGCCGAGGTGGCGGCCAACTTTGTCCACAGCAACTTTCCGAAGGTCGC 60 consensus_2584#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGAGTGGATCGAATCGGCCCCGATGGAGATCGG 60 * ** * * * * ** * ** * * * ** * * * ** *** consensus_2584#0 CCTCGAGGACGAACTGCTCGACATT-CCGCACACGCTGCT--GGTGAAGGTGATCGCCTC 117 consensus_2584#1 CC------GCATCCTGCCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGG 114 ** * **** * * ****** ** ** * * * ******* consensus_2584#0 CGAGGCGCTGCGGGTCGACAGCGA-GTATCAGGTGTTTAATGCCGCGCTGCGCTGGATCC 176 consensus_2584#1 CGAG-CGCGGCAGCCAGATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACT 173 **** *** ** * ** * * * ** * * * * * * * * * * * consensus_2584#0 GACACGATGTGGTGCCGCGCCGCCAGTACGTGTTTGAAATTTTGTCCCACGTGCGCATCG 236 consensus_2584#1 GGGAACCGATGGCACCG--ATGAATGTGCCCCGGTGCGAGTTTGGGCTCTGTACGC-TCG 230 * * *** *** * ** * ** * **** * ** *** *** consensus_2584#0 CTCTAGTGCCGGTAGGGCTAATCGATCAGGCCATCGCCGAGTGCCGGGATGTGTCGCTCA 296 consensus_2584#1 GCGGCACGCTGTACGCGATGGGCGGCTGG---ATCGGGGAGGACATTGGCGGCTCGATTG 287 ** * * * * ** * **** *** * * * *** * consensus_2584#0 AG-ATAGCGCTCCGCTCGG---TGCGCAAGGATCTGACATCGCGCCGCGGTCAGCTCGTG 352 consensus_2584#1 AGTGTTACGATCCGATGAAAAATGCGTGGCGAATGGTAGGCGATCTGCCGGAACCCAAGT 347 ** * ** **** * **** ** * ** * ** * * * consensus_2584#0 CCGTTGCGCGTGTGCCCGCGAGTTTGTGCGAAGAAGAGCATCTACGTGATTGGCGGATCG 412 consensus_2584#1 TCAGTATGGGTGT---CGTAAGCTT---CGAAGGCTTG-ATATACATTGTCGGTGGCT-- 398 * * * **** ** ** ** ***** * ** *** * * ** ** * consensus_2584#0 CGGCGAGAACGGTCGACCGGATGGACGCCAACGGATTGGATCTTTGAGTCCGTCATCAAG 472 consensus_2584#1 -----GCAATACTCACTCGA--GATATCTAACCGATCTGATC---------------AGC 436 ** ** ** * * *** *** **** * consensus_2584#0 TATGACATCTTTCGGCACGAGTGGATCGAATCGGCCCCGATGGAGATCGGCCGCATACTG 532 consensus_2584#1 TACAATCCCGTTACGCATGAATGGACGAAGCTCGCCCGAATGCAAACCGCTCGCTGCCAG 496 ** * * ** *** ** **** * **** *** * * ** *** * * consensus_2584#0 CCAGGGGTGGCCGCACTCGGTGGCAAGATTTACGTGATCGGTGGCGAGCGCGGCA-GCCA 591 consensus_2584#1 ATGGGGGTAGCCATTCTCGACCGCCATCTGTACGTGGTCGGTGGCAACAGCAGCCCAGCA 556 ***** *** **** ** * * ****** ******** * ** ** ** consensus_2584#0 GATCCTGGCGAACGGGGAGGTGTACGACACACAGAACAACAACTGGGAACCGATGGCACC 651 consensus_2584#1 GGAAGTGCTACGCACAGTCGAACGCTACAGCTTCGACGAGGACAAGTGGTCAATGGTTTC 616 * ** * * * * *** ** * ** * * **** * consensus_2584#0 GATG 655 consensus_2584#1 GC-- 618 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||