cluster # 2600

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Anopheles gambiae
cluster # 2600 cluster # 2600 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2600#0 length = 727 sequences # 1

consensus_2600#1 length = 668 sequences # 1

consensusID : consensus_2600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence

                              [CAGGAATGGAAGAAAATGAAACACTATTACTAGGAAAAGGATACACATTACTACGCTAAGTGCAATTAATGCAAGAATTTCTGCCTTAACCCTACTTCTTCCTACTTCGTAAGCTTTTCATTATGGGAGCAGTTTTACGCATTGCGCAATTACTTTTACGCAACTAGGAAATATCAAATGCATTCTCTATCTTCCAGCGAACAAAAATACACGAACAAAAACGCAACACCGTCGCATATTGGAAATATGCTGTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAAAAGCATTGTAAACAATGATATGGACGCGTGGCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAATGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGGATTGAGAGAAAAAAAAAAGAATGGAAAGTATTTACCAGAAGGAAGAGGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAACGAGACGCGATCGGTGATTGCATTTTAAGTTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATGCGGCGCTGTAAGATTAGGATAGGACGAATACGGATAGGCATCCAATTATTTATATTATTATTAAAATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGGACACACACTTAGAGAGGCACAACGCAACGCGCGT]

[+] EMBL BX616165             [CAGGAATGGAAGAAAATGAAACACTATTACTAGGAAAAGGATACACATTACTACGCTAAGTGCAATTAATGCAAGAATTTCTGCCTTAACCCTACTTCTTCCTACTTCGTAAGCTTTTCATTATGGGAGCAGTTTTACGCATTGCGCAATTACTTTTACGCAACTAGGAAATATCAAATGCATTCTCTATCTTCCAGCGAACAAAAATACACGAACAAAAACGCAACACCGTCGCATATTGGAAATATGCTGTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAAAAGCATTGTAAACAATGATATGGACGCGTGGCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAATGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGGATTGAGAGAAAAAAAAAAGAATGGAAAGTATTTACCAGAAGGAAGAGGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAACGAGACGCGATCGGTGATTGCATTTTAAGTTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATGCGGCGCTGTAAGATTAGGATAGGACGAATACGGATAGGCATCCAATTATTTATATTATTATTAAAATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGGACACACACTTAGAGAGGCACAACGCAACGCGCGT]




>consensus_2600#0
CAGGAATGGAAGAAAATGAAACACTATTACTAGGAAAAGGATACACATTACTACGCTAAG
TGCAATTAATGCAAGAATTTCTGCCTTAACCCTACTTCTTCCTACTTCGTAAGCTTTTCA
TTATGGGAGCAGTTTTACGCATTGCGCAATTACTTTTACGCAACTAGGAAATATCAAATG
CATTCTCTATCTTCCAGCGAACAAAAATACACGAACAAAAACGCAACACCGTCGCATATT
GGAAATATGCTGTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAAAAGCATTGTAAA
CAATGATATGGACGCGTGGCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAA
TGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGAGCGTACGAAAACGGAAACAGTT
TGATAGAGATTGGATTGAGAGAAAAAAAAAAGAATGGAAAGTATTTACCAGAAGGAAGAG
GAGGTAGGTGGAAGCATTTACACGTAAAAGCGAACGAGACGCGATCGGTGATTGCATTTT
AAGTTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATGCGGCGCTGTAAGATTAG
GATAGGACGAATACGGATAGGCATCCAATTATTTATATTATTATTAAAATTACTACTACA
ACGTGAGTAATAGACGACAGCACTTTCGAGGGGACACACACTTAGAGAGGCACAACGCAA
CGCGCGT

consensusID : consensus_2600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGCCCACGCGTCCGGCGCAATCCCGCTGCATATTGGAAATATGCTCTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAGAAGCATTGTAAACAATGATATGGACGCGTGCCCCCCCCCCCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAATGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGGATCGAGAAAAAAAGGAAAGTATTTACCAGAAGGAAGAGGAAGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAAATGAGACGCGATCGGTGATTGCATTTTAAACTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATACGGCGCTGTAAGATTAGGATAGAACGAATACGGATAGGCATCCAATTATTATTATTATTATAATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGGGACACACACACTTTGAGAGGCACGACGCACACACAAACCGCGCGTTTGCTTGTTGGTGGAGTGGAGAATCGGTTTTTGCTTCTTTTAAAGCAAAACGCTACACAAAACCAACCGGAAAAAAGAAGCATAAGTACAGTACTGTTTCTTTCGCATTTTTACTAGTTCTTACCATTTTTTTTATACCTTTTCTTTTGACATGACTTTTCATACCTGT]

[+] EMBL BM588346             [CCGCCCACGCGTCCGGCGCAATCCCGCTGCATATTGGAAATATGCTCTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAGAAGCATTGTAAACAATGATATGGACGCGTGCCCCCCCCCCCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAATGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGGATCGAGAAAAAAAGGAAAGTATTTACCAGAAGGAAGAGGAAGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAAATGAGACGCGATCGGTGATTGCATTTTAAACTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATACGGCGCTGTAAGATTAGGATAGAACGAATACGGATAGGCATCCAATTATTATTATTATTATAATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGGGACACACACACTTTGAGAGGCACGACGCACACACAAACCGCGCGTTTGCTTGTTGGTGGAGTGGAGAATCGGTTTTTGCTTCTTTTAAAGCAAAACGCTACACAAAACCAACCGGAAAAAAGAAGCATAAGTACAGTACTGTTTCTTTCGCATTTTTACTAGTTCTTACCATTTTTTTTATACCTTTTCTTTTGACATGACTTTTCATACCTGT]




>consensus_2600#1
CCGCCCACGCGTCCGGCGCAATCCCGCTGCATATTGGAAATATGCTCTACCGGTAACAAG
AACAATATAAAGCAGTTAAGCAGAAGCATTGTAAACAATGATATGGACGCGTGCCCCCCC
CCCCCCCCGCGCCCGTATGCCTGTGATTTCGAAACACTAGAGAATGAGCGTACGAAAACG
GAAACAGTTTGATAGAGATTGGATCGAGAAAAAAAGGAAAGTATTTACCAGAAGGAAGAG
GAAGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAAATGAGACGCGATCGGTGATTGCA
TTTTAAACTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATACGGCGCTGTAAGA
TTAGGATAGAACGAATACGGATAGGCATCCAATTATTATTATTATTATAATTACTACTAC
AACGTGAGTAATAGACGACAGCACTTTCGAGGGGGACACACACACTTTGAGAGGCACGAC
GCACACACAAACCGCGCGTTTGCTTGTTGGTGGAGTGGAGAATCGGTTTTTGCTTCTTTT
AAAGCAAAACGCTACACAAAACCAACCGGAAAAAAGAAGCATAAGTACAGTACTGTTTCT
TTCGCATTTTTACTAGTTCTTACCATTTTTTTTATACCTTTTCTTTTGACATGACTTTTC
ATACCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2600#0      CAGGAATGGAAGAAAATGAAACACTATTACTAGGAAAAGGATACACATTACTACGCTAAG 60
consensus_2600#1      ------------------------------------------------------------
                                                                                  

consensus_2600#0      TGCAATTAATGCAAGAATTTCTGCCTTAACCCTACTTCTTCCTACTTCGTAAGCTTTTCA 120
consensus_2600#1      ------------------------------------------------------------
                                                                                  

consensus_2600#0      TTATGGGAGCAGTTTTACGCATTGCGCAATTACTTTTACGCAACTAGGAAATATCAAATG 180
consensus_2600#1      ------------------------------------------------------------
                                                                                  

consensus_2600#0      CATTCTCTATCTTCCAGCGAACAAAAATACACGAACAAAAACGCAACACCGTCGCATATT 240
consensus_2600#1      ------------------------CCGCCCACGCGTCCGG-CGCAATCCCGCTGCATATT 35
                                                   ****        *****  ***  *******

consensus_2600#0      GGAAATATGCTGTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAAAAGCATTGTAAA 300
consensus_2600#1      GGAAATATGCTCTACCGGTAACAAGAACAATATAAAGCAGTTAAGCAGAAGCATTGTAAA 95
                      *********** *********************************** ************

consensus_2600#0      CAATGATATGGACGCGTGGCCCCC---------GCGCCCGTATGCCTGTGATTTCGAAAC 351
consensus_2600#1      CAATGATATGGACGCGTGCCCCCCCCCCCCCCCGCGCCCGTATGCCTGTGATTTCGAAAC 155
                      ****************** *****         ***************************

consensus_2600#0      ACTAGAGAATGAGCGTACGAAAACGGAAACAGTTTGATAGAGATTGAGCGTACGAAAACG 411
consensus_2600#1      ACTAGAGAATGAGCGTACGAAA-----------------------------------ACG 180
                      **********************                                   ***

consensus_2600#0      GAAACAGTTTGATAGAGATTGGATTGAGAGAAAAAAAAAAGAATGGAAAGTATTTACCAG 471
consensus_2600#1      GAAACAGTTTGATAGAGATTGGATCGAGAAAAAAA---------GGAAAGTATTTACCAG 231
                      ************************ **** *****         ****************

consensus_2600#0      AAGGAAGAGGA---GGTAGGTGGAAGCATTTACACGTAAAAGCGAA-CGAGACGCGATCG 527
consensus_2600#1      AAGGAAGAGGAAGAGGTAGGTGGAAGCATTTACACGTAAAAGCGAAATGAGACGCGATCG 291
                      ***********   ********************************  ************

consensus_2600#0      GTGATTGCATTTTAAGTTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATGCGGC 587
consensus_2600#1      GTGATTGCATTTTAAACTGCAATTTAAGCATACAGCAGAACCGGTTGAACAAAATACGGC 351
                      ***************  ************************************** ****

consensus_2600#0      GCTGTAAGATTAGGATAGGACGAATACGGATAGGCATCCAATTATTTATATTATTATTAA 647
consensus_2600#1      GCTGTAAGATTAGGATAGAACGAATACGGATAGGCATCCAATTATT---ATTATTATTAT 408
                      ****************** ***************************   ********** 

consensus_2600#0      AATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGG---ACACACACTTA 704
consensus_2600#1      AATTACTACTACAACGTGAGTAATAGACGACAGCACTTTCGAGGGGGACACACACACTTT 468
                      **********************************************   ********** 

consensus_2600#0      GAGAGGCACAACGCA-ACGCGCGT------------------------------------ 727
consensus_2600#1      GAGAGGCACGACGCACACACAAACCGCGCGTTTGCTTGTTGGTGGAGTGGAGAATCGGTT 528
                      ********* ***** ** *                                        

consensus_2600#0      ------------------------------------------------------------
consensus_2600#1      TTTGCTTCTTTTAAAGCAAAACGCTACACAAAACCAACCGGAAAAAAGAAGCATAAGTAC 588
                                                                                  

consensus_2600#0      ------------------------------------------------------------
consensus_2600#1      AGTACTGTTTCTTTCGCATTTTTACTAGTTCTTACCATTTTTTTTATACCTTTTCTTTTG 648
                                                                                  

consensus_2600#0      --------------------
consensus_2600#1      ACATGACTTTTCATACCTGT 668