cluster # 2601

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Anopheles gambiae
cluster # 2601 cluster # 2601 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2601#0 length = 644 sequences # 1

consensus_2601#1 length = 480 sequences # 1

consensusID : consensus_2601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCATTACCAACTTGGCAATGCATTCCGTCCCGAGGGAGAATAGTATTCTCGTTAAGCAGCATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTCTCGATGTTGGGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACAACACCGTCCACTATGTTTTAATGTTAATGGTTCAGGTGTGAGACACCGGTTGCGAGACTGTGTTTTCGCATCGGATCTTATGTCTTAGCCAGGTGTGTACAGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAGCTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATGATCTAGCAAAATATTAAAATAAAAGACAACGGCAAACACCGGTCAAGAAACAGACGAAAAGTCGGTAGCAGCAGCACATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACGAATCCTGGACATAAAATACTTCCTTTTATAGGTTCTCTAGAATGAACATCAGATGTGTAAGTGTGTCTAGCAATGAAGCACAGCTTTTGTTTTTTTAATTGAAAGTTAATAGAAACACACAATGTTTATTTGTAATTATCTCTAGCATGCAATGTCAGAAAAGG]

[+] EMBL BX615012             [CCATTACCAACTTGGCAATGCATTCCGTCCCGAGGGAGAATAGTATTCTCGTTAAGCAGCATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTCTCGATGTTGGGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACAACACCGTCCACTATGTTTTAATGTTAATGGTTCAGGTGTGAGACACCGGTTGCGAGACTGTGTTTTCGCATCGGATCTTATGTCTTAGCCAGGTGTGTACAGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAGCTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATGATCTAGCAAAATATTAAAATAAAAGACAACGGCAAACACCGGTCAAGAAACAGACGAAAAGTCGGTAGCAGCAGCACATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACGAATCCTGGACATAAAATACTTCCTTTTATAGGTTCTCTAGAATGAACATCAGATGTGTAAGTGTGTCTAGCAATGAAGCACAGCTTTTGTTTTTTTAATTGAAAGTTAATAGAAACACACAATGTTTATTTGTAATTATCTCTAGCATGCAATGTCAGAAAAGG]




>consensus_2601#0
CCATTACCAACTTGGCAATGCATTCCGTCCCGAGGGAGAATAGTATTCTCGTTAAGCAGC
ATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTC
TCGATGTTGGGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACAACACCGTCCACTAT
GTTTTAATGTTAATGGTTCAGGTGTGAGACACCGGTTGCGAGACTGTGTTTTCGCATCGG
ATCTTATGTCTTAGCCAGGTGTGTACAGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAG
CTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATG
ATCTAGCAAAATATTAAAATAAAAGACAACGGCAAACACCGGTCAAGAAACAGACGAAAA
GTCGGTAGCAGCAGCACATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACG
AATCCTGGACATAAAATACTTCCTTTTATAGGTTCTCTAGAATGAACATCAGATGTGTAA
GTGTGTCTAGCAATGAAGCACAGCTTTTGTTTTTTTAATTGAAAGTTAATAGAAACACAC
AATGTTTATTTGTAATTATCTCTAGCATGCAATGTCAGAAAAGG

consensusID : consensus_2601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [CCGGTTAAATTAGTTAGCATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTCTCGATGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACACCACCGTCCACTATGTTTTAATGTTAATGGTTTAGGTGTGAGACACCGGTTGCGAGACTGTGCTTTCGCATCGGATCTTATGTCTTAGCCAGGTGTGTACTGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAGCTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATGATCTAGCAAAATATTAAAATAAAAGACAATGGCAAACACCGGTCAAGAAACAGGCGAAAAGTCGGTAGCAGCAGCTCATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACGAATCCTGGACATAAAATACTTCCTTTTATAGGTTTTCTCTAGAATGA]

[+] EMBL BM637433             [CCGGTTAAATTAGTTAGCATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTCTCGATGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACACCACCGTCCACTATGTTTTAATGTTAATGGTTTAGGTGTGAGACACCGGTTGCGAGACTGTGCTTTCGCATCGGATCTTATGTCTTAGCCAGGTGTGTACTGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAGCTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATGATCTAGCAAAATATTAAAATAAAAGACAATGGCAAACACCGGTCAAGAAACAGGCGAAAAGTCGGTAGCAGCAGCTCATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACGAATCCTGGACATAAAATACTTCCTTTTATAGGTTTTCTCTAGAATGA]




>consensus_2601#1
CCGGTTAAATTAGTTAGCATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGT
TATACACTGTCGTTGTTCTCGATGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACAC
CACCGTCCACTATGTTTTAATGTTAATGGTTTAGGTGTGAGACACCGGTTGCGAGACTGT
GCTTTCGCATCGGATCTTATGTCTTAGCCAGGTGTGTACTGTATTCGCTTGTCTTAAGAG
CAATAGTTTGCAGCTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAG
GATTAAAAAGATGATCTAGCAAAATATTAAAATAAAAGACAATGGCAAACACCGGTCAAG
AAACAGGCGAAAAGTCGGTAGCAGCAGCTCATAGTAATGGTATGTGAAAACTTATCTCAC
TGCACAAAGTACGAATCCTGGACATAAAATACTTCCTTTTATAGGTTTTCTCTAGAATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2601#0      CCATTACCAACTTGGCAATGCATTCCGTCCCGAGGGAGAATAGTATTCTCGTTAAGCAGC 60
consensus_2601#1      ------------------------------------------CCGGTTAAATTAGTTAGC 18
                                                                    *    ***   ***

consensus_2601#0      ATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTC 120
consensus_2601#1      ATAGTTTTTATTCTCTCTCTCTTTCCTGTGTAGTCACGTTGTTATACACTGTCGTTGTTC 78
                      ************************************************************

consensus_2601#0      TCGATGTTGGGTAGAAGGATTTTGAATCAGTTTAACATTTTTAACAACACCGTCCACTAT 180
consensus_2601#1      TCGAT-----GTAGAAGGATTTTGAATCAGTTTAACATTTTTAACACCACCGTCCACTAT 133
                      *****     ************************************ *************

consensus_2601#0      GTTTTAATGTTAATGGTTCAGGTGTGAGACACCGGTTGCGAGACTGTGTTTTCGCATCGG 240
consensus_2601#1      GTTTTAATGTTAATGGTTTAGGTGTGAGACACCGGTTGCGAGACTGTGCTTTCGCATCGG 193
                      ****************** ***************************** ***********

consensus_2601#0      ATCTTATGTCTTAGCCAGGTGTGTACAGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAG 300
consensus_2601#1      ATCTTATGTCTTAGCCAGGTGTGTACTGTATTCGCTTGTCTTAAGAGCAATAGTTTGCAG 253
                      ************************** *********************************

consensus_2601#0      CTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATG 360
consensus_2601#1      CTAACCACGATTCGCTGCTATCGAGAGATGTGGTGGATAGTGGAAAGGATTAAAAAGATG 313
                      ************************************************************

consensus_2601#0      ATCTAGCAAAATATTAAAATAAAAGACAACGGCAAACACCGGTCAAGAAACAGACGAAAA 420
consensus_2601#1      ATCTAGCAAAATATTAAAATAAAAGACAATGGCAAACACCGGTCAAGAAACAGGCGAAAA 373
                      ***************************** *********************** ******

consensus_2601#0      GTCGGTAGCAGCAGCACATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACG 480
consensus_2601#1      GTCGGTAGCAGCAGCTCATAGTAATGGTATGTGAAAACTTATCTCACTGCACAAAGTACG 433
                      *************** ********************************************

consensus_2601#0      AATCCTGGACATAAAATACTTCCTTTTATAGGTT--CTCTAGAATGAACATCAGATGTGT 538
consensus_2601#1      AATCCTGGACATAAAATACTTCCTTTTATAGGTTTTCTCTAGAATGA------------- 480
                      **********************************  ***********             

consensus_2601#0      AAGTGTGTCTAGCAATGAAGCACAGCTTTTGTTTTTTTAATTGAAAGTTAATAGAAACAC 598
consensus_2601#1      ------------------------------------------------------------
                                                                                  

consensus_2601#0      ACAATGTTTATTTGTAATTATCTCTAGCATGCAATGTCAGAAAAGG 644
consensus_2601#1      ----------------------------------------------