These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGAAGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAATGAAGTAACAAACAAAACAGCACTAGT] [+] EMBL BX606336 [GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGAAGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAATGAAGTAACAAACAAAACAGCACTAGT] consensusID : consensus_2618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATTGCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGAAGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA] [+] EMBL BX627737 [TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATTGCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGAAGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2618#0 ------------------------------------------------------------ consensus_2618#1 TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATT 60 consensus_2618#0 -GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGAT 59 consensus_2618#1 GCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGAT 120 *** * * * ** * ******************************* consensus_2618#0 ACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGAT 119 consensus_2618#1 ACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAAT 180 ********************************************************* ** consensus_2618#0 GATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGC 179 consensus_2618#1 GATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGC 240 ************************************************************ consensus_2618#0 GTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTC 239 consensus_2618#1 GTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTC 300 ************** ********************************************* consensus_2618#0 TGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGA 299 consensus_2618#1 TGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGA 360 ************ ***************************************** ***** consensus_2618#0 AGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAA-GCGCT 358 consensus_2618#1 AGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCT 420 **** ******* ***************************************** ***** consensus_2618#0 GTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTC 418 consensus_2618#1 GTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTC 480 ************************************************************ consensus_2618#0 AACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAG 478 consensus_2618#1 AACCGATATTGAACGAGACACACACACACAC------------TAAAATCCAGAGGAAAG 528 ******************************* ***************** consensus_2618#0 AGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAA 538 consensus_2618#1 AGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAA 588 ************************************************************ consensus_2618#0 GCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAA 598 consensus_2618#1 GCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAA 648 ************** ********************************************* consensus_2618#0 GCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAA 658 consensus_2618#1 GCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA------------------------- 683 *********************************** consensus_2618#0 TGAAGTAACAAACAAAACAGCACTAGT 685 consensus_2618#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||