cluster # 2627

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Anopheles gambiae
cluster # 2627 cluster # 2627 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2627#0 length = 295 sequences # 1

consensus_2627#1 length = 237 sequences # 1

consensusID : consensus_2627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [GTGAGTTTAGCATGGAGTATAGCCGCTACTCGCCCTGTATGCCCGAGGTGCAGGAAAAGCTGTGCCACGAATACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGAACTAAAATGTGGTGTGGATGTGGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATTCGAGTGTGTTAAGTTTAAACATTATTTAAGGCGGCATTATTTGGTACACGACGGAATTCCCCCACAACAGGGGAGAAATAAATCATTCAAAAAAAAAAAAAAAGAGATCCTTATT]

[+] EMBL BX621819             [GTGAGTTTAGCATGGAGTATAGCCGCTACTCGCCCTGTATGCCCGAGGTGCAGGAAAAGCTGTGCCACGAATACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGAACTAAAATGTGGTGTGGATGTGGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATTCGAGTGTGTTAAGTTTAAACATTATTTAAGGCGGCATTATTTGGTACACGACGGAATTCCCCCACAACAGGGGAGAAATAAATCATTCAAAAAAAAAAAAAAAGAGATCCTTATT]




>consensus_2627#0
GTGAGTTTAGCATGGAGTATAGCCGCTACTCGCCCTGTATGCCCGAGGTGCAGGAAAAGC
TGTGCCACGAATACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGA
ACTAAAATGTGGTGTGGATGTGGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATT
CGAGTGTGTTAAGTTTAAACATTATTTAAGGCGGCATTATTTGGTACACGACGGAATTCC
CCCACAACAGGGGAGAAATAAATCATTCAAAAAAAAAAAAAAAGAGATCCTTATT

consensusID : consensus_2627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCTGTGCCACGAGTACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGAACTAAAATGTGGTGTGGATGTTGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATTCGAGTGTGTTAAGTTTAAACATTATTTAAGGCGACATTATTTGGTACACGACGGAATTCCCCCGCAACAGGGGAGAAATAAATCATTC]

[+] EMBL BM637785             [CCGCCCACGCGTCCGCCCACGCGTCCGGCTGTGCCACGAGTACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGAACTAAAATGTGGTGTGGATGTTGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATTCGAGTGTGTTAAGTTTAAACATTATTTAAGGCGACATTATTTGGTACACGACGGAATTCCCCCGCAACAGGGGAGAAATAAATCATTC]




>consensus_2627#1
CCGCCCACGCGTCCGCCCACGCGTCCGGCTGTGCCACGAGTACCAGGTGTCGCAGGGCCT
GGTGGTCGACAAGAAGCAGAAGAAGAAGAACTAAAATGTGGTGTGGATGTTGGAGAGAGA
TCGTGGAAGTAATCAATCTGTAAATAATTCGAGTGTGTTAAGTTTAAACATTATTTAAGG
CGACATTATTTGGTACACGACGGAATTCCCCCGCAACAGGGGAGAAATAAATCATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2627#0      GTGAGTTTAGCATGGAGTATAGCCGCTACTCGCCCTGTATGCCCGAGGTGCAGGAAAAGC 60
consensus_2627#1      -----------------------------CCGCCC-ACGCGTCCGCC-CACGCGTCCGGC 29
                                                    *****     * ***     *  *    **

consensus_2627#0      TGTGCCACGAATACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGA 120
consensus_2627#1      TGTGCCACGAGTACCAGGTGTCGCAGGGCCTGGTGGTCGACAAGAAGCAGAAGAAGAAGA 89
                      ********** *************************************************

consensus_2627#0      ACTAAAATGTGGTGTGGATGTGGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATT 180
consensus_2627#1      ACTAAAATGTGGTGTGGATGTTGGAGAGAGATCGTGGAAGTAATCAATCTGTAAATAATT 149
                      ********************* **************************************

consensus_2627#0      CGAGTGTGTTAAGTTTAAACATTATTTAAGGCGGCATTATTTGGTACACGACGGAATTCC 240
consensus_2627#1      CGAGTGTGTTAAGTTTAAACATTATTTAAGGCGACATTATTTGGTACACGACGGAATTCC 209
                      ********************************* **************************

consensus_2627#0      CCCACAACAGGGGAGAAATAAATCATTCAAAAAAAAAAAAAAAGAGATCCTTATT 295
consensus_2627#1      CCCGCAACAGGGGAGAAATAAATCATTC--------------------------- 237
                      *** ************************