These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT] [+] EMBL BM588604 [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT] consensusID : consensus_2628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT] [+] EMBL BM584787 [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2628#0 CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCAT 60 consensus_2628#1 ---------------------------------------------CCGCCCACGCGTC-C 14 * * * ** consensus_2628#0 CATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 120 consensus_2628#1 GATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 74 *********************************************************** consensus_2628#0 ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 180 consensus_2628#1 ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 134 ************************************************************ consensus_2628#0 ATTTGATAACA-----------ATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 229 consensus_2628#1 ATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 194 *********** ************************************** consensus_2628#0 ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 289 consensus_2628#1 ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 254 ************************************************************ consensus_2628#0 ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 349 consensus_2628#1 ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 314 ************************************************************ consensus_2628#0 TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 409 consensus_2628#1 TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 374 ************************************************************ consensus_2628#0 ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 469 consensus_2628#1 ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 434 ************************************************************ consensus_2628#0 AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 529 consensus_2628#1 AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 494 ************************************************************ consensus_2628#0 GCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTA 589 consensus_2628#1 GCTGGAGGGATCGTTTCAACTGCTTTTT-------------------------------- 522 **************************** consensus_2628#0 ACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT 647 consensus_2628#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||