Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2628 cluster # 2628       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2628#0 length = 647 sequences # 1  
consensus_2628#1 length = 522 sequences # 1  

consensusID : consensus_2628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT]

[+] EMBL BM588604             [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT]


>consensus_2628#0 CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCAT CATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA ATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCT TCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAA TAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGC GAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGA AGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCG CAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGAT CGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACA AGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT



consensusID : consensus_2628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT]

[+] EMBL BM584787             [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT]


>consensus_2628#1 CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAG CTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTT GTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATT ATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTG TTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGA TGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCT TGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACT TAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAG TTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2628#0      CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCAT 60
consensus_2628#1      ---------------------------------------------CCGCCCACGCGTC-C 14
                                                                    *  * *    **  

consensus_2628#0      CATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 120
consensus_2628#1      GATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 74
                       ***********************************************************

consensus_2628#0      ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 180
consensus_2628#1      ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 134
                      ************************************************************

consensus_2628#0      ATTTGATAACA-----------ATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 229
consensus_2628#1      ATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 194
                      ***********           **************************************

consensus_2628#0      ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 289
consensus_2628#1      ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 254
                      ************************************************************

consensus_2628#0      ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 349
consensus_2628#1      ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 314
                      ************************************************************

consensus_2628#0      TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 409
consensus_2628#1      TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 374
                      ************************************************************

consensus_2628#0      ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 469
consensus_2628#1      ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 434
                      ************************************************************

consensus_2628#0      AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 529
consensus_2628#1      AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 494
                      ************************************************************

consensus_2628#0      GCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTA 589
consensus_2628#1      GCTGGAGGGATCGTTTCAACTGCTTTTT-------------------------------- 522
                      ****************************                                

consensus_2628#0      ACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT 647
consensus_2628#1      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)