cluster # 2628

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Anopheles gambiae
cluster # 2628 cluster # 2628 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2628#0 length = 647 sequences # 1

consensus_2628#1 length = 522 sequences # 1

consensusID : consensus_2628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT]

[+] EMBL BM588604             [CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCATCATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT]




>consensus_2628#0
CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCAT
CATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA
ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA
ATTTGATAACAATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCT
TCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAA
TAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGC
GAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGA
AGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCG
CAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGAT
CGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTAACACGACAACA
AGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT

consensusID : consensus_2628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT]

[+] EMBL BM584787             [CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT]




>consensus_2628#1
CCGCCCACGCGTCCGATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAG
CTACTGCTACTAAAATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTT
GTTACCAATATGGAATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATT
ATTGTTTGCAGCAAACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTG
TTCCCAAAAAATCAACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGA
TGAACTTGAACCCTTTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCT
TGTTTAAGCTGAAGACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACT
TAGAACCATGGGAAAGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAG
TTAGAGGCGTCGGAGCTGGAGGGATCGTTTCAACTGCTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2628#0      CCGAAATTAGAAATTGTATTAAATTGTTTGGTTTGACCCGCAGTCACATCTAGCTATCAT 60
consensus_2628#1      ---------------------------------------------CCGCCCACGCGTC-C 14
                                                                    *  * *    **  

consensus_2628#0      CATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 120
consensus_2628#1      GATTGACCAATATTATGTGTTAAAGTTTTGAAGTTAATTGATCAAGCTACTGCTACTAAA 74
                       ***********************************************************

consensus_2628#0      ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 180
consensus_2628#1      ATTTATCCAAACTATCCCATGTAAACTTTTTGTTGCCAAGAGTTTTGTTACCAATATGGA 134
                      ************************************************************

consensus_2628#0      ATTTGATAACA-----------ATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 229
consensus_2628#1      ATTTGATAACATATTCCTACAGATGGACATGGACAGCAAGAGTATTATTGTTTGCAGCAA 194
                      ***********           **************************************

consensus_2628#0      ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 289
consensus_2628#1      ACTCAGCACCTTCAGCAAAGTCCGCATGCATCGAATCAAGCAAGTGTTCCCAAAAAATCA 254
                      ************************************************************

consensus_2628#0      ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 349
consensus_2628#1      ACGAAGCAAAATAATGCGCTACCACTCTGGGGGAATGAAACATCGATGAACTTGAACCCT 314
                      ************************************************************

consensus_2628#0      TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 409
consensus_2628#1      TTAATTCTTGCGAACATACAGGGTTCGAGTTATTTTAAAGTGTCCTTGTTTAAGCTGAAG 374
                      ************************************************************

consensus_2628#0      ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 469
consensus_2628#1      ACTTACCATGAAGTTGTAGACGAAATATACTATCAAGTGAAACACTTAGAACCATGGGAA 434
                      ************************************************************

consensus_2628#0      AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 529
consensus_2628#1      AGAGGCTCTCGCAAAACCGCGGGTCAGACAGGAATGTGTGGAGGAGTTAGAGGCGTCGGA 494
                      ************************************************************

consensus_2628#0      GCTGGAGGGATCGTTTCAACTGCTTTTTGTCTGCTCTACAAACTTTACACTTTACGATTA 589
consensus_2628#1      GCTGGAGGGATCGTTTCAACTGCTTTTT-------------------------------- 522
                      ****************************                                

consensus_2628#0      ACACGACAACAAGTTAATGGACTACTGTCTCACGGCGATTCCCCCTACATACGAGCAT 647
consensus_2628#1      ----------------------------------------------------------