cluster # 2664

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Anopheles gambiae
cluster # 2664 cluster # 2664 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2664#0 length = 656 sequences # 1

consensus_2664#1 length = 564 sequences # 1

consensusID : consensus_2664#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGAGAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGTTCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCGTGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTATAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANACCAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGTAGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTAATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA]

[+] EMBL AL934645             [ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGAGAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGTTCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCGTGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTATAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANACCAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGTAGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTAATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA]




>consensus_2664#0
ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGA
GAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGT
TCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTC
CCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCA
GTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAA
CCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCG
TGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTA
TAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANAC
CAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGT
AGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTA
ATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA

consensusID : consensus_2664#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CGCGCTCTCGGGGGGCGAAAGGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAAAGGTGGAAGAATATTCAATTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATAAAATGTCAAGAAAGGGCGATAGCGTGTGCAATAGGGGGAAAATGTGGAAGAAAAACTGGATGGTAGAGGAAAAGAGATTATAACAAACGAACGAACAAATGTGGATGGACGTGAGAAAAGTGAAACATGAAACAAGATAAAAACAGAAGCACGCAATGCAAACATACTGTGTTGTGCTACAAGTAGTTGCGGGCGGGTAAAGATGGTAAATAAGAATCTTAGTAACATGGGTGTTAATTAAAATTTTCAGCAGCCCAGTGAAATCCGTAAGAACAACAGCAACAGCCTACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTATTGGGCAAATAAAACTGCTTGAA]

[+] EMBL BX627409             [CGCGCTCTCGGGGGGCGAAAGGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATGGAAAGGTGGAAGAATATTCAATTGTAGACGAGAAACAGAACCTATAAAATGATTTAATATATTAAAACAATATAAAATGTCAAGAAAGGGCGATAGCGTGTGCAATAGGGGGAAAATGTGGAAGAAAAACTGGATGGTAGAGGAAAAGAGATTATAACAAACGAACGAACAAATGTGGATGGACGTGAGAAAAGTGAAACATGAAACAAGATAAAAACAGAAGCACGCAATGCAAACATACTGTGTTGTGCTACAAGTAGTTGCGGGCGGGTAAAGATGGTAAATAAGAATCTTAGTAACATGGGTGTTAATTAAAATTTTCAGCAGCCCAGTGAAATCCGTAAGAACAACAGCAACAGCCTACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTATTGGGCAAATAAAACTGCTTGAA]




>consensus_2664#1
CGCGCTCTCGGGGGGCGAAAGGTGGTTTGTGTTTGCGCGTTCCCCTCTCGGCTCCCAATC
AATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCAGTGAGCATAGCAGACATG
GAAAGGTGGAAGAATATTCAATTGTAGACGAGAAACAGAACCTATAAAATGATTTAATAT
ATTAAAACAATATAAAATGTCAAGAAAGGGCGATAGCGTGTGCAATAGGGGGAAAATGTG
GAAGAAAAACTGGATGGTAGAGGAAAAGAGATTATAACAAACGAACGAACAAATGTGGAT
GGACGTGAGAAAAGTGAAACATGAAACAAGATAAAAACAGAAGCACGCAATGCAAACATA
CTGTGTTGTGCTACAAGTAGTTGCGGGCGGGTAAAGATGGTAAATAAGAATCTTAGTAAC
ATGGGTGTTAATTAAAATTTTCAGCAGCCCAGTGAAATCCGTAAGAACAACAGCAACAGC
CTACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTT
ATTGGGCAAATAAAACTGCTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2664#0      ATCGCCCCGAGGCTACTTGTCTTTATGATGTCGACCTGGCTGAGAAGTCGGACTCGATGA 60
consensus_2664#1      ------------------------------------------------------------
                                                                                  

consensus_2664#0      GAAGAAAAAGCTCGATTAATTGAGTCAAGAAAATAGCAATAGATAATGAAATTATCTCGT 120
consensus_2664#1      ------------------------------------------------------------
                                                                                  

consensus_2664#0      TCGCAACTGCCGAACGCGCGCTCTCGGGGTGGCGAAAGNGTGGTTTGTGTTTGCGCGTTC 180
consensus_2664#1      ----------------CGCGCTCTCGGGG-GGCGAAAGG-TGGTTTGTGTTTGCGCGTTC 42
                                      ************* ********  ********************

consensus_2664#0      CCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCA 240
consensus_2664#1      CCCTCTCGGCTCCCAATCAATGCTCGCACTAGCGCGAATGCAAGGAGGTATCAGCTGCCA 102
                      ************************************************************

consensus_2664#0      GTGAGCATAGCAGACATGGAACAGGTGGAAGAATATTCAATTTGTAGACGAGAAACAGAA 300
consensus_2664#1      GTGAGCATAGCAGACATGGAA-AGGTGGAAGAATATTCAATT-GTAGACGAGAAACAGAA 160
                      ********************* ******************** *****************

consensus_2664#0      CCTATAAAATGATTTAATATATTAAAACAATATACCANTGTCCAGAAAGGGCGACTAGCG 360
consensus_2664#1      CCTATAAAATGATTTAATATATTAAAACAATATAA-AATGTCAAGAAAGGGCGA-TAGCG 218
                      **********************************  * **** *********** *****

consensus_2664#0      TGTGCAATACGGGGAACAATGTGGAACGAAAAACGGACTGGTAGCAGNGAAAAGAGATTA 420
consensus_2664#1      TGTGCAATAGGGGGAA-AATGTGGAA-GAAAAACTGGATGGTAG--AGGAAAAGAGATTA 274
                      ********* ****** ********* ******* *  ******    ************

consensus_2664#0      TAACAAACGAACGAACAANATGTGGATGGACGCTGNAGCANCANGTGCACACACTGANAC 480
consensus_2664#1      TAACAAACGAACGAACAAA-TGTGGATGGACGTGAGAAAAGTGAA---ACA---TGAAAC 327
                      ******************  ************    *  *        ***   *** **

consensus_2664#0      CAAGGACTAANAGAACAGAAGCACGCACANTGCNACACGATACTGTGTTGTGCTACAAGT 540
consensus_2664#1      AAG-----ATAAAAACAGAAGCACGCA--ATGCAA-AC-ATACTGTGTTGTGCTACAAGT 378
                       *      *  * **************   *** * ** *********************

consensus_2664#0      AGTTGCGNNGGCGGGTAAAGGATGGTNGAGCNTAAGAATCTTAGTAAGCATGGGTTGTTA 600
consensus_2664#1      AGTTGCGG--GCGGGTAAAG-ATGGTAA---ATAAGAATCTTAGTAA-CATGGGT-GTTA 430
                      *******   ********** *****      *************** ******* ****

consensus_2664#0      ATNCAAGANAGTTCTTCAGCNGCCCCGGNGACAATCCGTAAGANCAANCAGCAGCA---- 656
consensus_2664#1      ATTAAAA-----TTTTCAGCAGCCC-AGTGA-AATCCGTAAGAACAAC-AGCAACAGCCT 482
                      **  **      * ****** ****  * ** *********** ***  **** **    

consensus_2664#0      ------------------------------------------------------------
consensus_2664#1      ACAAAACAGACGAACAAACAAACGTAAATCACACAAACAGACACACACACACACATTTAT 542
                                                                                  

consensus_2664#0      ----------------------
consensus_2664#1      TGGGCAAATAAAACTGCTTGAA 564