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Anopheles gambiae
cluster # 2670 cluster # 2670       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2670#0 length = 586 sequences # 1  
consensus_2670#1 length = 477 sequences # 1  

consensusID : consensus_2670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG]

[+] EMBL BX628672             [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG]


>consensus_2670#0 TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGC CACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGT GTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTC CAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATC AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGT TGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAA ACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGC CGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCA GGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG



consensusID : consensus_2670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence
                              [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG]

[+] EMBL BM638307             [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG]


>consensus_2670#1 CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACG CTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAA GCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTAT TTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGG TTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGG CGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATA ATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGC AGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2670#0      TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGC 60
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      CACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGT 120
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      GTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTC 180
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      CAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATC 240
consensus_2670#1      ------------CCGCGGTTTGTTCGT--TTTTTTTTTAATTTAAATTAGCAAATTAATC 46
                                  ** ********* **  *******************************

consensus_2670#0      AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 300
consensus_2670#1      AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 106
                      ************************************************************

consensus_2670#0      AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGT-CTGTTTGTGTGCTAGCAGAAACG 359
consensus_2670#1      AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACG 166
                      ************************************ ***********************

consensus_2670#0      TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAA 419
consensus_2670#1      TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAA-CAAACAAATCAA 225
                      *********************************************** ************

consensus_2670#0      AACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGG 479
consensus_2670#1      AACTAAACAAAGCGGTTACGACACGCTCAGAGCT--------------------GAGTGG 265
                      ******************* *************                     ******

consensus_2670#0      CCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 539
consensus_2670#1      CCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 325
                      ***************** ******************************************

consensus_2670#0      AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG------------- 586
consensus_2670#1      AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGA 385
                      ***********************************************             

consensus_2670#0      ------------------------------------------------------------
consensus_2670#1      AGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAG 445
                                                                                  

consensus_2670#0      --------------------------------
consensus_2670#1      GGGCGAATAATTATCAAGTTTTTGGATGTTTG 477
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)