cluster # 2670

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Anopheles gambiae
cluster # 2670 cluster # 2670 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2670#0 length = 586 sequences # 1

consensus_2670#1 length = 477 sequences # 1

consensusID : consensus_2670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG]

[+] EMBL BX628672             [TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGCCACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGTGTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTCCAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGCCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG]




>consensus_2670#0
TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGC
CACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGT
GTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTC
CAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATC
AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA
AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTCTGTTTGTGTGCTAGCAGAAACGT
TGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAAA
ACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGGC
CGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCA
GGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG

consensusID : consensus_2670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG]

[+] EMBL BM638307             [CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGGTTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG]




>consensus_2670#1
CCGCGGTTTGTTCGTTTTTTTTTTAATTTAAATTAGCAAATTAATCAAAATCGGAACACG
CTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAAAGAGCGGGAAAAAA
GCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACGTTGTTATACACTAT
TTTTACAATTTTATGTCAATTGTATTTAAAAAACAAACAAATCAAAACTAAACAAAGCGG
TTACGACACGCTCAGAGCTGAGTGGCCGAGAGACTTATCGACTCAGTGTTATCTCCGAGG
CGAACGGCAATAAAACAGGCAATGCAGGATTGTACAGTTGAAGCAGACAGTTAACGAATA
ATCGGTTTGGCGGTTTGAAAGAAGAAGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGC
AGAATGTACTGTGATGTGAAGAAAGGGGCGAATAATTATCAAGTTTTTGGATGTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2670#0      TGAGCAACTTCGTTAGTGCGGGTACAAGATCAGGGTAGACACGTGTATGGGACAGAAAGC 60
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      CACAAGCAATAGTCGCACGGAATTGAGACGGGGAAAATCAAAGAGAGCTGTTAAAAATGT 120
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      GTGTGCCATCGAATCGAATTTTAAGCAGCCGGGGCAAATGGGGGGAATCGGGATACTCTC 180
consensus_2670#1      ------------------------------------------------------------
                                                                                  

consensus_2670#0      CAAAACTGTCGACCTCGGTTTGTTTGTGTTTTTTTTTTAATTTAAATTAGCAAATTAATC 240
consensus_2670#1      ------------CCGCGGTTTGTTCGT--TTTTTTTTTAATTTAAATTAGCAAATTAATC 46
                                  ** ********* **  *******************************

consensus_2670#0      AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 300
consensus_2670#1      AAAATCGGAACACGCTTCAAGCAGGTGTCCACAATAAAACCAGCACGGTGCGGGTAGCAA 106
                      ************************************************************

consensus_2670#0      AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGT-CTGTTTGTGTGCTAGCAGAAACG 359
consensus_2670#1      AGAGCGGGAAAAAAGCATTGGGAAGATACGGTGTGTACTGTTTGTGTGCTAGCAGAAACG 166
                      ************************************ ***********************

consensus_2670#0      TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAAACAAACAAATCAA 419
consensus_2670#1      TTGTTATACACTATTTTTACAATTTTATGTCAATTGTATTTAAAAAA-CAAACAAATCAA 225
                      *********************************************** ************

consensus_2670#0      AACTAAACAAAGCGGTTACAACACGCTCAGAGCGCGCGCGTTTGCGCTAAAGCAGAGTGG 479
consensus_2670#1      AACTAAACAAAGCGGTTACGACACGCTCAGAGCT--------------------GAGTGG 265
                      ******************* *************                     ******

consensus_2670#0      CCGAGAGACTTATCGACCCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 539
consensus_2670#1      CCGAGAGACTTATCGACTCAGTGTTATCTCCGAGGCGAACGGCAATAAAACAGGCAATGC 325
                      ***************** ******************************************

consensus_2670#0      AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCG------------- 586
consensus_2670#1      AGGATTGTACAGTTGAAGCAGACAGTTAACGAATAATCGGTTTGGCGGTTTGAAAGAAGA 385
                      ***********************************************             

consensus_2670#0      ------------------------------------------------------------
consensus_2670#1      AGAAAAAAAAACTTCGCCGTGTGTAGTGTTGTTGCAGAATGTACTGTGATGTGAAGAAAG 445
                                                                                  

consensus_2670#0      --------------------------------
consensus_2670#1      GGGCGAATAATTATCAAGTTTTTGGATGTTTG 477